BodenmillerGroup / IntroDataAnalysis
Repository for teaching and instruction purposes
☆9Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for IntroDataAnalysis
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated this week
- ☆10Updated 3 months ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Visualizing feature measurements on label images in napari☆10Updated 3 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆23Updated this week
- A napari plugin to view and edit metadata☆10Updated last year
- Course on Deep Learning for imaging using PyTorch☆13Updated 2 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 2 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated this week
- ☆13Updated 4 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆23Updated last month
- ☆12Updated 6 months ago
- Process and analyze surfaces using vedo in napari.☆22Updated 6 months ago
- ☆21Updated 2 months ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Updated 5 months ago
- Main tasks for the Fractal analytics platform☆14Updated this week
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆13Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 5 months ago
- napari plugin for iteratively improving 3D instance segmentation of cells (u-net x watershed)☆9Updated 7 months ago
- napari plugin for trackastra☆12Updated last month
- ☆15Updated 2 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated this week
- ☆12Updated 4 years ago
- ilastik plugin for napari☆13Updated 7 months ago
- Python libraries for loading, running and packaging bioimage.io models☆28Updated this week