Bohdan-Khomtchouk / NERO-nlp
NERO-nlp is a PyPI package for biomedical Named Entity (Recognition) Ontology
☆12Updated 4 years ago
Alternatives and similar repositories for NERO-nlp:
Users that are interested in NERO-nlp are comparing it to the libraries listed below
- ☆22Updated 2 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated last year
- A Serverless Text Annotation Tool for Corpus Development☆55Updated 2 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Medical Relations and Entities Extraction☆36Updated 2 years ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- Load all concepts and relationships from UMLS into a Neo4j database☆11Updated 4 years ago
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆20Updated 6 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 5 years ago
- The CleanCoNLL dataset from our EMNLP 2023 paper where we corrected annotation errors and inconsistencies in CoNLL-03.☆24Updated 10 months ago
- Semantic query and text mining tool☆22Updated last year
- ☆23Updated 2 years ago
- BioMedICUS: A biomedical and clinical NLP engine.☆19Updated 2 weeks ago
- A convolutional neural network model for relation extraction.☆13Updated 2 years ago
- Transformers for Clinical NLP☆24Updated last week
- Python text processing, pattern matching, and NLP framework☆65Updated last year
- Spacy pipeline object for extracting values that correspond to a named entity (e.g., birth dates, account numbers, laboratory results)☆54Updated 2 years ago
- Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J☆16Updated 10 months ago
- A near real-time named-entity recognizer☆59Updated 11 months ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated 11 months ago
- Dataset for the NLPMC @ NAACL 2021 Paper: Assertion Detection in Clinical Notes: Medical Language Models to the Rescue?☆15Updated 3 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- Biomedical Data-to-Text Generation via Fine-Tuning Transformers☆28Updated 3 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 6 months ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- Healthsea is a spaCy pipeline for analyzing user reviews of supplementary products for their effects on health.☆91Updated 3 years ago
- Tool for disambiguating acronyms and abbreviations in text for NLP applications☆22Updated 10 months ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆100Updated last year
- ☆54Updated 5 years ago