Alternatives and similar repositories for SIDER4

Users that are interested in SIDER4 are comparing it to the libraries listed below

• bio-ontology-research-group / multi-drug-embedding
  Method for drug repurposing from knowledge graphs and literature
  ☆36Updated 5 years ago
• hkmztrk / SMILESVecProteinRepresentation
  Source code for "A novel methodology on distributed representations of proteins using their interacting ligands"
  ☆27Updated 5 years ago
• tatonetti-lab / nsides-release
  Analysis notebooks and database interaction scripts for the nsides project
  ☆19Updated last year
• kexinhuang12345 / SkipGNN
  SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)
  ☆65Updated 5 years ago
• dsi-bdi / biokg
  A Knowledge Graph for Relational Learning On Biological Data
  ☆108Updated last year
• AstraZeneca / awesome-drug-pair-scoring
  Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)
  ☆98Updated 3 years ago
• drug2ways / drug2ways
  A Python package for drug discovery by analyzing causal paths on multiscale networks
  ☆28Updated last year
• papercode-for-cheung / DeepMGT-DTI
  ☆18Updated 4 years ago
• labsyspharm / DRIADrc
  Resources for Drug Repurposing In Alzheimer's Disease (DRIAD) work
  ☆11Updated 4 years ago
• tal-baum / drugbank_xml2csv_python
  Python script for processing DrugBank XML to MySQL-ready CSV files
  ☆19Updated 8 years ago
• MindRank-Biotech / PharmKG
  ☆58Updated 5 years ago
• HYsxe / ACME
  Supplementary data for the ACME algorithm
  ☆23Updated 3 years ago
• SmartDataAnalytics / BioKEEN
  A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…
  ☆45Updated 3 years ago
• mikejhuang / PhageProtVec
  Amino Acid Embedding Representation as Machine Learning Features
  ☆20Updated 7 years ago
• SuLab / DrugMechDB
  A database of paths that represent the mechanism of action from a drug to a disease in an indication.
  ☆67Updated 3 months ago
• kheyer / Deep-Synthesis
  A deep learning framework for predicting chemical synthesis
  ☆26Updated last year
• MaayanLab / SEP-L1000
  Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)
  ☆10Updated 3 years ago
• clinfo / kGCN
  A graph-based deep learning framework for life science
  ☆123Updated 2 years ago
• greenelab / snorkeling
  Extracting biomedical relationships from literature with Snorkel 🏊
  ☆58Updated 5 years ago
• XuanLin1991 / DeepGS
  DeepGS: Deep Representation Learning of Graphs and Sequences for Drug-Target Binding Affinity Prediction (ECAI 2020)
  ☆26Updated 5 years ago
• nrohani / NDD
  Drug-Drug Interaction Predicting by Neural Network Using Integrated Similarity
  ☆29Updated 4 years ago
• Barabasi-Lab / COVID-19
  Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19
  ☆28Updated 4 years ago
• bioinf-jku / interpretable_ml_drug_discovery
  Interpreting graph convolutional filters of target prediction network
  ☆48Updated 6 years ago
• googleinterns / protein-embedding-retrieval
  ☆34Updated 5 years ago
• ehsanasgari / DeepPrime2Sec
  ☆26Updated 3 years ago
• ChengF-Lab / CoV-KGE
  ☆10Updated 5 years ago
• yangkevin2 / coronavirus_data
  ☆81Updated 2 years ago
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆54Updated 6 months ago
• dmis-lab / ReSimNet
  Implementation of ReSimNet for drug response similarity prediction
  ☆40Updated 2 years ago
• hetio / hetmatpy
  Python package for matrix storage and operations on hetnets
  ☆14Updated 2 years ago