scienceai / mesh-tree
Utility functions for traversing the Medical Subject Heading (MeSH) ontology tree
☆40Updated 6 years ago
Alternatives and similar repositories for mesh-tree:
Users that are interested in mesh-tree are comparing it to the libraries listed below
- Code and documentation for the release of MeSH in RDF format☆78Updated 5 months ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆86Updated 7 months ago
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆41Updated 11 months ago
- ☆67Updated 2 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- Automatic Risk of Bias assessment☆25Updated 8 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Feature learning over RDF data and OWL ontologies☆45Updated 2 years ago
- A Linked Open Data platform for the scholarly domain.☆73Updated 6 years ago
- Retrieve and process PubTator annotations☆44Updated last year
- Grounding of biomedical named entities with contextual disambiguation☆43Updated last month
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆65Updated this week
- Automatically exported from code.google.com/p/ogms☆23Updated 3 years ago
- a module to calculate the MeSH similarity☆24Updated 3 years ago
- A near real-time named-entity recognizer☆59Updated 10 months ago
- Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches☆40Updated 6 years ago
- D2Refine - A Metadata Harmonization and Validation Workbench☆17Updated 6 years ago
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 8 years ago
- a tool for mapping free-text descriptions of entities to ontology terms☆19Updated 8 months ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Updated 2 years ago
- Semantic Similarity Measures using Disjunctive Shared Information☆25Updated 9 months ago
- Reach Biomedical Information Extraction☆97Updated 4 months ago
- Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials☆18Updated 6 years ago
- ☆72Updated last year
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Semantic query and text mining tool☆22Updated last year