gem-pasteur / Macsyfinder_models
Repository containing up-to-date definitions and models for the detection of macromolecular systems with MacSyFinder.
☆11Updated 5 years ago
Alternatives and similar repositories for Macsyfinder_models:
Users that are interested in Macsyfinder_models are comparing it to the libraries listed below
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- ☆25Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Discover and annotate the virome☆39Updated 5 months ago
- Improvement of metagenome-assembled genomes☆50Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 9 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Prophage Activity Estimator☆26Updated 10 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last week
- Calculate assocations between genes and traits☆23Updated 3 weeks ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated last month
- ☆45Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- ☆20Updated 6 months ago
- A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT☆14Updated 9 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆20Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆23Updated this week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 11 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆23Updated 2 months ago
- Tool to estimate genome quality of microbial eukaryotes☆37Updated 2 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆55Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 5 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated 3 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Bacterial GWAS analysis☆39Updated 3 weeks ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆12Updated last year
- ☆50Updated 11 months ago