Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the link the ReadMe to obtain the latest version of the workflow.
☆28Jan 4, 2021Updated 5 years ago
Alternatives and similar repositories for gatk4-genome-processing-pipeline
Users that are interested in gatk4-genome-processing-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflows for converting between sequence data formats☆40Sep 5, 2021Updated 4 years ago
- ☆18May 19, 2022Updated 3 years ago
- Workflows for germline short variant discovery with GATK4☆139May 7, 2021Updated 4 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Oct 29, 2020Updated 5 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆161Aug 10, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆81Nov 30, 2018Updated 7 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Jan 28, 2024Updated 2 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆58Mar 19, 2020Updated 6 years ago
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26May 4, 2023Updated 2 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated last month
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Apr 30, 2025Updated 11 months ago
- A repository for the schemas used for the Data Repository Service.☆63Mar 23, 2026Updated last week
- Web-site for the 2020 CRUK CC Bioinformatics Summer School (Held virtually)☆24Mar 4, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Warp Analysis Research Pipelines☆225Updated this week
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- Ascertained Sequentially Markovian Coalescent☆16Oct 22, 2025Updated 5 months ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 3 months ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆27Jul 17, 2024Updated last year
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- Tests Allelic Expression data for extreme imbalance w.r.t. population☆11Oct 8, 2021Updated 4 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- A structural variation pipeline for short-read sequencing☆201Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆20Nov 30, 2023Updated 2 years ago
- ☆12Aug 23, 2018Updated 7 years ago
- ☆10May 31, 2022Updated 3 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Jan 24, 2022Updated 4 years ago
- UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)☆22Updated this week
- Fast HLA type inference from whole-genome data☆143Apr 3, 2025Updated 11 months ago
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆49May 26, 2025Updated 10 months ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- ☆13Feb 12, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆12Sep 4, 2022Updated 3 years ago
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆10Feb 27, 2020Updated 6 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- WDL tools for parsing, type-checking, and more☆28Sep 2, 2025Updated 6 months ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 3 years ago