Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the link the ReadMe to obtain the latest version of the workflow.
☆28Jan 4, 2021Updated 5 years ago
Alternatives and similar repositories for gatk4-genome-processing-pipeline
Users that are interested in gatk4-genome-processing-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflows for converting between sequence data formats☆40Sep 5, 2021Updated 4 years ago
- ☆19May 19, 2022Updated 3 years ago
- Workflows for germline short variant discovery with GATK4☆141May 7, 2021Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Oct 29, 2020Updated 5 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆162Aug 10, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆82Nov 30, 2018Updated 7 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Jan 28, 2024Updated 2 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆59Mar 19, 2020Updated 6 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26May 4, 2023Updated 3 years ago
- A nextflow pipeline for calling exome CNVs☆14Feb 24, 2026Updated 2 months ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Apr 30, 2025Updated last year
- A repository for the schemas used for the Data Repository Service.☆63Apr 28, 2026Updated last week
- Web-site for the 2020 CRUK CC Bioinformatics Summer School (Held virtually)☆24Mar 4, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Warp Analysis Research Pipelines☆225Updated this week
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- Ascertained Sequentially Markovian Coalescent☆18Oct 22, 2025Updated 6 months ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 4 months ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆27Jul 17, 2024Updated last year
- CLI to automate Nextflow pipeline testing