Infectious Disease Sequencing Platform
☆91Feb 10, 2026Updated 8 months ago
Alternatives and similar repositories for czid-web
Users that are interested in czid-web are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Portable WDL workflows for IDseq production pipelines☆32Jan 19, 2022Updated 4 years ago
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆60Feb 8, 2026Updated 8 months ago
- ☆13Aug 20, 2025Updated last year
- CZID (formerly IDseq) infectious disease command-line interface☆23Apr 8, 2026Updated 6 months ago
- deduplicate FASTA and FASTQ files☆23Feb 16, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Set of tools for viral metagenomics.☆18Aug 17, 2026Updated last month
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Jan 10, 2022Updated 4 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆34Oct 25, 2013Updated 12 years ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 5 years ago
- Deep learning-based prediction of regulatory genome sequences☆12Apr 20, 2020Updated 6 years ago
- Portable WDL workflows for CZ ID production pipelines☆53Apr 23, 2026Updated 5 months ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆19Jul 11, 2022Updated 4 years ago
- Client side iobio library for building and executing iobio commands☆10Dec 31, 2018Updated 7 years ago
- Pipelines to do MinION sequencing of Zika virus☆15Jul 25, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TaxTriage is a Nextflow workflow designed to agnostically identify and give confidences of microbial organisms within short- or long-read…☆83Updated this week
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 3 months ago
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- ☆12Jan 29, 2020Updated 6 years ago
- A robust, extensible metagenomics pipeline☆177Oct 5, 2026Updated last week
- Long-read metagenomic analysis☆112Oct 10, 2023Updated 3 years ago
- Simulate metagenomic short reads from one or more populations.☆26Jan 29, 2025Updated last year
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 4 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆38Oct 1, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 5 years ago
- ☆23Mar 5, 2025Updated last year
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Sep 8, 2026Updated last month
- 🌈 Interactive analysis of metagenomics data☆454Sep 17, 2025Updated last year
- SURPI☆86May 10, 2016Updated 10 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Remove primer sequence from BAM alignments by soft-clipping☆29Dec 5, 2019Updated 6 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 10 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 3 years ago
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 3 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆106Sep 17, 2022Updated 4 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated 2 months ago
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 10 months ago