chanzuckerberg / czid-webLinks
Infectious Disease Sequencing Platform
☆86Updated last week
Alternatives and similar repositories for czid-web
Users that are interested in czid-web are comparing it to the libraries listed below
Sorting:
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆110Updated 3 weeks ago
- Antibiotic resistance prediction in minutes☆109Updated 7 months ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆94Updated 8 months ago
- Antimicrobial Resistance Identification By Assembly☆177Updated last year
- The Biological Observation Matrix (BIOM) Format Project☆94Updated this week
- Catalog of genomic indexes freely available from public clouds☆61Updated 3 weeks ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆137Updated last year
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆117Updated last year
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆125Updated last year
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆120Updated 2 weeks ago
- ☆107Updated 3 weeks ago
- SEER, reimplemented in python 🐍🔮☆122Updated last month
- ☆71Updated 4 years ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆138Updated last week
- viral-ngs: complete pipelines☆64Updated this week
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆86Updated last year
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆82Updated 7 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆92Updated last year
- A tool to genotype CYP2D6 with WGS data☆53Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆233Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆98Updated 3 years ago
- reference-free transcriptome assembly for short and long reads☆108Updated last year
- "Reads to report" for public health and clinical microbiology☆141Updated last year
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆128Updated last year
- seqfu - Sequece Fastx Utilities☆119Updated 5 months ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆137Updated last week
- Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files☆110Updated 3 weeks ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆153Updated 8 months ago