usegalaxy-eu / ena-cog-uk-wfs
Collection of scripts for automated SARS-CoV-2 genome surveillance.
☆22Updated last year
Alternatives and similar repositories for ena-cog-uk-wfs:
Users that are interested in ena-cog-uk-wfs are comparing it to the libraries listed below
- Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.☆18Updated 3 years ago
- ENA upload tool - script your Open Data upload to the European Nucleotide Archive☆28Updated last month
- ☆9Updated 3 years ago
- Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.☆23Updated last week
- Galaxy Workflows maintained by the Intergalactic Workflow Commission☆33Updated this week
- Testing building mulled containers for multi-requirement tools.☆71Updated this week
- Simple test framework for Nextflow pipelines☆156Updated 2 months ago
- List of tools included in https://usegalaxy.eu☆26Updated this week
- UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)☆19Updated last week
- An easy-to-use way for running Galaxy workflows.☆20Updated 5 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆120Updated last year
- Demonstrating best practices for bioinformatics command line tools☆116Updated 4 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- Download files from NCBI Entrez by accession☆120Updated 6 months ago
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- A robust, extensible metagenomics pipeline☆169Updated 7 months ago
- Pipeline for metabolic annotation of microbial genomes☆143Updated this week
- [WIP] A Nextflow plugin to estimate the CO2 footprint of pipeline runs.☆19Updated this week
- A collection of reusable WDL tasks. Category:Other☆86Updated this week
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆139Updated last week
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆120Updated last week
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆199Updated this week
- Pipeline to fetch metadata and raw FastQ files from public databases☆171Updated this week
- Assembly statistic visualisation☆89Updated last year
- Convert various sequence formats to FASTA☆133Updated 2 years ago
- snipit: summarise snps relative to your reference sequence☆155Updated last month
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆91Updated this week
- Sequana: a set of Snakemake NGS pipelines☆146Updated 3 weeks ago
- An imagemagick-like frontend to Biopython SeqIO☆116Updated last year