QuantGen / MTM
Multivariate Gaussian Models for Genomic and Pedigree Data
☆12Updated 4 years ago
Alternatives and similar repositories for MTM:
Users that are interested in MTM are comparing it to the libraries listed below
- R package to estimate kinship and FST from SNP data☆19Updated 3 months ago
- ☆43Updated 3 weeks ago
- Mixed models @lme4 + custom covariances + parameter constraints☆50Updated 4 years ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆68Updated 8 months ago
- Statistical GENetics Input/Output Functions☆17Updated 5 months ago
- Parallel Genomic evaluations in R☆17Updated 4 months ago
- Statistical methods for forest genetic resources analysts☆33Updated 5 months ago
- Added functions for Echidna in R☆11Updated last year
- Package for multi-environment trial analysis☆35Updated 3 months ago
- An R package for the spatial analysis of population genetic data.☆19Updated 2 weeks ago
- An R package to compute relationship matrices for diploid and autotetraploid species☆17Updated last year
- Process MS results in R, in a tidy way☆17Updated 6 years ago
- This is a read-only mirror of the CRAN R package repository. sommer — Solving Mixed Model Equations in R. Homepage: https://github.com/…☆16Updated 3 months ago
- population genetic simulations with R and Shiny☆27Updated 2 months ago
- An R package to help in plotting PCA results nicely.☆13Updated 5 years ago
- a take on ordination plots using ggplot2☆63Updated 6 months ago
- See https://biometris.github.io/statgenGWAS for a full description☆14Updated last month
- An application to compare genetic maps with D3 & Shiny☆22Updated last year
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆146Updated last year
- asremlPlus is an R package that augments the use of 'ASReml-R' and 'ASReml4-R' in fitting mixed models☆19Updated this week
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆17Updated 10 months ago
- Effective Computing—Resources for Computational Biologists☆26Updated 4 years ago
- scatter pie plot☆61Updated 3 weeks ago
- A matrix-like wrapper around PLINK .bed files☆18Updated 4 months ago
- R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed eff…☆18Updated 4 months ago
- Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…☆14Updated last week
- Fitting latent factor mixed models☆12Updated 4 years ago
- ☆16Updated 5 years ago
- lme4 for Genomic Selection☆16Updated 3 years ago
- starmie: plotting and inference for population structure models☆12Updated 6 years ago