A guide on how to find and download raw RNA-seq data from GEO. Batch download FASTQ files using a Python script and the NCBI SRA tools prefetch and fastq-dump.
☆14Mar 21, 2022Updated 4 years ago
Alternatives and similar repositories for python-fastq-downloader
Users that are interested in python-fastq-downloader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 2 years ago
- ☆46Jan 16, 2026Updated 2 months ago
- Continuous Wavelet Transform. Based on the work of Roger Fearick.☆13Feb 22, 2016Updated 10 years ago
- ☆23Nov 9, 2025Updated 4 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated 5 months ago
- CArbohydrate-Protein Site IdentiFier☆15Aug 22, 2023Updated 2 years ago
- pipeline for volumetric cell segmentation☆14Feb 12, 2026Updated last month
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Jan 9, 2019Updated 7 years ago
- UCE Bioinformatics Pipeline☆17Sep 29, 2025Updated 5 months ago
- ☆17Mar 5, 2026Updated 3 weeks ago
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆18Mar 19, 2026Updated last week
- Scripts related to building major-allele references for Bowtie and Bowtie 2☆13Jun 3, 2021Updated 4 years ago
- A Bioconductor package and shiny app for DNA methylation data length bias adjustment in gene set testing☆13May 8, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- phd qualifying exams for uw-madison statistics 2010-2018☆13Jul 24, 2019Updated 6 years ago
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆12Sep 4, 2024Updated last year
- ☆15Dec 29, 2025Updated 2 months ago
- ☆17Mar 11, 2024Updated 2 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Nov 29, 2022Updated 3 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 4 years ago
- ☆14Dec 19, 2022Updated 3 years ago
- OpenType font for writing dalecarlian runes using the alphabet.☆11Sep 18, 2021Updated 4 years ago
- ☆20Sep 8, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆25Apr 17, 2025Updated 11 months ago
- ☆20Mar 28, 2017Updated 8 years ago
- ☆19Jun 5, 2024Updated last year
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- Import zotero library to notion database☆21Sep 15, 2023Updated 2 years ago
- My Bash notes☆12Feb 7, 2026Updated last month
- ☆13Sep 11, 2025Updated 6 months ago
- Generate rust command line executables from gRPC protobuf services.☆11Aug 27, 2022Updated 3 years ago
- HiFi error modeler and simulator with ploidy☆11Feb 12, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- WhatsCloud is an android app which allows you to analyze your WhatsApp chat history on the fly with only one click☆12Jul 29, 2019Updated 6 years ago
- Stability Selection with Error Control☆26Jan 30, 2026Updated last month
- ☆23Feb 17, 2026Updated last month
- ☆10Jul 1, 2020Updated 5 years ago
- A hidden Markov model for detecting segments of shared ancestry (identity by descent)☆12Dec 15, 2023Updated 2 years ago
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆15Updated this week
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆19Oct 12, 2018Updated 7 years ago