doxeylab / learn-genomics-in-linuxLinks
An interactive course on learning genomics/bioinformatics tasks in Linux.
☆38Updated 3 months ago
Alternatives and similar repositories for learn-genomics-in-linux
Users that are interested in learn-genomics-in-linux are comparing it to the libraries listed below
Sorting:
- ☆56Updated last week
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Updated 4 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆86Updated 2 weeks ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last week
- ☆73Updated 3 years ago
- R tools for Agilent electrophoresis data☆46Updated 2 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Demonstrating best practices for bioinformatics command line tools☆117Updated 5 years ago
- ☆50Updated 4 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 6 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated 3 weeks ago
- Learning the Variant Call Format☆148Updated 4 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆71Updated 3 weeks ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 3 years ago
- Issue tracker for the Biostar Handbook☆64Updated 3 years ago
- Nextflow training material for introductory tutorial☆107Updated 3 years ago
- A small-RNA sequencing analysis pipeline☆97Updated last week
- Tip and tricks for BAM files☆86Updated 7 years ago
- Melbourne Bioinformatics documentation in markdown format☆120Updated this week
- Visualizing transcript structure and annotation using ggplot2☆163Updated last year
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆143Updated 2 years ago
- website for the rnaseq course☆114Updated 3 weeks ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆91Updated 4 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆52Updated 2 years ago
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- Short lessons from FAS Informatics coffee hour☆155Updated 2 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Generate IGV style locus tracks from bigWig files in R☆175Updated last year
- What should perfect bioinformatic tools be like?☆142Updated last month