krassowski / easy-entrezLinks
Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
☆79Updated 2 years ago
Alternatives and similar repositories for easy-entrez
Users that are interested in easy-entrez are comparing it to the libraries listed below
Sorting:
- The light frontend for BioChatter, in pure Python☆54Updated 4 months ago
- Batch download articles based on PMID (Pubmed ID)☆131Updated 2 years ago
- A Python package to download full article PDFs from OA publications☆52Updated 10 months ago
- Backend library for conversational AI in biomedicine☆192Updated this week
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆136Updated 3 months ago
- ☆31Updated 2 years ago
- A resource of adverse drug effects extracted from FDA structured product labels☆85Updated 5 months ago
- Python package that wraps around the ClinicalTrials.gov API☆56Updated last year
- API providing access to papers and authors scraped from biorxiv.org☆56Updated 2 years ago
- OBO-formatted ontologies → networkx (Python 3)☆150Updated 8 months ago
- Explainable AI for Bioinformatics☆126Updated 2 years ago
- Template for creating a BioCypher-driven knowledge graph☆12Updated last month
- A unifying framework for biomedical research knowledge graphs☆281Updated this week
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆52Updated 5 months ago
- The advanced implementation for BioChatter, using Next.js☆15Updated 10 months ago
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆137Updated last week
- Visualization and analysis platform for metabolic data and network pattern recognition☆40Updated 8 months ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆28Updated 2 years ago
- K-RET: Knowledgeable Biomedical Relation Extraction System☆10Updated 9 months ago
- simplified searching, fetching, and parsing records from NCBI using their E-utilities interface☆63Updated this week
- a module to calculate the MeSH similarity☆27Updated 4 years ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆38Updated 2 years ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆39Updated last year
- ☆25Updated last year
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 4 years ago
- Machine learning tools for biomarker analysis☆72Updated this week
- biotoolsregistry: discovery portal for bioinformatics☆81Updated this week
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Updated 4 years ago
- Python-based framework for computational immunomics☆15Updated last year
- ☆14Updated this week