datajoint / datajoint-tutorialsLinks
Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
☆14Updated last week
Alternatives and similar repositories for datajoint-tutorials
Users that are interested in datajoint-tutorials are comparing it to the libraries listed below
Sorting:
- DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT☆15Updated 6 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 10 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆63Updated last year
- Convert Intan (rhd or rhs) files to NWB file format☆10Updated 2 years ago
- A Python API for working with Neurodata stored in the NWB Format☆204Updated 2 weeks ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆78Updated 7 months ago
- pyqt5 dependent applications for IBL sessions☆31Updated last month
- Browser-based NWB visualization and DANDI exploration☆60Updated this week
- Information about Neuropixels electrode arrays☆96Updated 11 months ago
- A head-mounted camera system integrates detailed behavioral monitoring with multichannel electrophysiology in freely moving mice☆28Updated 4 years ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆138Updated 4 months ago
- Jupyter notebook templates for processing and analyzing neuroscience data.☆12Updated last month
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆28Updated 2 weeks ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆81Updated 11 months ago
- Utilities for managing Neuropixel datasets and Kilosort results☆49Updated 6 months ago
- WIP: Python port of Kilosort2☆50Updated 2 years ago
- Tutorials for using SpikeInterface on extracellular datasets.☆68Updated 2 years ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆72Updated 3 weeks ago
- Web app for viewing results of ephys spike sorting☆27Updated 2 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆110Updated last month
- SpikeGLX postprocessing [tshift filter CAR fix join extract]☆12Updated 2 weeks ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆68Updated last week
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated last week
- A curated list of awesome Neuropixels resources.☆119Updated last week
- Visualization of electrophysiological data from Elephant☆24Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last week
- Free, platform independent, behavior tracking software.☆142Updated 5 months ago
- Python package to handle probe layout, geometry and wiring to device.☆73Updated 2 weeks ago
- Archived code for reading data saved by the Open Ephys GUI☆60Updated 2 years ago
- Collection of probe description for probeinterface☆17Updated 2 weeks ago