Alternatives and similar repositories for ssm

Users that are interested in ssm are comparing it to the libraries listed below

• zashwood / glm-hmm
  Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IB…
  ☆48Updated last year
• murthylab / GLMHMM
  ☆23Updated 5 years ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆74Updated 2 months ago
• PeyracheLab / Tutorial_HDPlaceCells_Analysis
  A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.
  ☆14Updated 7 years ago
• EnnyvanBeest / UnitMatch
  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days
  ☆63Updated this week
• PeyracheLab / pynacollada
  pynapple collaborative data analysis (high level python scripts)
  ☆37Updated last year
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆46Updated 5 years ago
• egokcen / DLAG
  A dimensionality reduction framework for disentangling the flow of signals between populations of neurons
  ☆31Updated last month
• arthur-pe / slicetca
  Library to perform Slice Tensor Component Analysis (sliceTCA)
  ☆53Updated 3 months ago
• ahwillia / tensortools
  A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA
  ☆35Updated last year
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆65Updated 6 months ago
• petersaj / AP_histology
  Histology processing
  ☆66Updated 2 weeks ago
• Eden-Kramer-Lab / replay_trajectory_classification
  State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
  ☆49Updated 9 months ago
• dstolz / epsych
  NEW v1.1: https://github.com/dstolz/epsych_v1.1 Epsych is a toolbox for extending Tucker-Davis Technologies hardware and sof…
  ☆15Updated 3 years ago
• rajanlab / CURBD
  Code to train and analyze multi-region data-constrained RNNs and perform Current-Based Decomposition (CURBD)
  ☆53Updated 4 years ago
• tjd2002 / tjd-shared-code
  Neuroscience/electrophsyiology data analysis tools (mostly Matlab)
  ☆14Updated 6 years ago
• pillowlab / GLMspiketraintutorial_python
  ☆54Updated 2 years ago
• AllenInstitute / brain_observatory_examples
  Gallery of visualizations and analyses of the Allen Brain Observatory
  ☆25Updated 2 years ago
• pillowlab / neuroGLM
  Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
  ☆70Updated 5 years ago
• buzsakilab / 3d_print_designs
  ☆18Updated last year
• lposani / decodanda
  Decoding and geometrical analysis of neural activity with built-in best practices
  ☆44Updated 2 months ago
• nicholas-roy / psytrack
  ☆54Updated 3 months ago
• glaserlab / sca
  Sparse Component Analysis: An unsupervised method for recovering interpretable latent factors
  ☆28Updated 4 months ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆27Updated this week
• BarbourLab / lussac
  Package for automatic post-processing and merging of multiple spike-sorting analyses.
  ☆26Updated this week
• irisstone / glmhmm
  code to fit GLMs, HMMs, and GLM-HMMs (aka IO-HMMs)
  ☆30Updated 10 months ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆51Updated 5 months ago
• gloewing / photometry_FLMM
  Code for Functional Mixed Models for Fiber Photometry
  ☆11Updated last week
• djoshea / neuropixel-utils
  Utilities for managing Neuropixel datasets and Kilosort results
  ☆47Updated last month
• Dynamics-of-Neural-Systems-Lab / MARBLE
  Package for the data-driven representation of non-linear dynamics over manifolds based on a statistical distribution of local phase portr…
  ☆73Updated 4 months ago