pyPhotometry / code
pyPhotometry code, GUI and micropython firmware
☆11Updated 3 months ago
Alternatives and similar repositories for code:
Users that are interested in code are comparing it to the libraries listed below
- Python code for interacting with the Open Ephys GUI☆31Updated 5 months ago
- Match suite2p ROIs between imaging sessions☆23Updated 5 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆45Updated last year
- Open-source stereotaxic coordinator☆14Updated 2 years ago
- Image processing and tools for widefield imaging☆18Updated 5 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆67Updated last month
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆33Updated 2 weeks ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- Archived code for reading data saved by the Open Ephys GUI☆59Updated last year
- WIP: Python port of Kilosort2☆50Updated last year
- ☆51Updated 5 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆72Updated 4 months ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 6 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆98Updated last month
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆53Updated this week
- Fiber photometry analysis☆22Updated last month
- Matlab code for interacting with the Open Ephys GUI☆14Updated 4 months ago
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆25Updated 7 months ago
- Region Of Interest Classification and Tracking☆16Updated this week
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆24Updated last year
- The Freely Moving Animal (FMA) Toolbox is a Matlab toolbox. Its purpose is to help analyze electrophysiological and behavioral data recor…☆12Updated 3 years ago
- IBL core shared libraries☆62Updated this week
- Tools for identifying sharp wave ripple events using LFPs☆35Updated 3 months ago
- Browser-based NWB visualization and DANDI exploration☆50Updated last month
- Tutorials for using SpikeInterface on extracellular datasets.☆61Updated last year
- A deep learning framework for synaptic event detection☆10Updated this week
- "Approaches to Study Neural Circuits" course☆65Updated last month
- Functions to assess quality of spike sorting results☆32Updated last year
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆49Updated this week
- Calcium Data Extraction and Analysis☆43Updated 2 years ago