thibautjombart / covid19_cases_from_deathsView external linksLinks
Shiny app to infer caes from new deaths of COVID-19
☆11Mar 30, 2020Updated 5 years ago
Alternatives and similar repositories for covid19_cases_from_deaths
Users that are interested in covid19_cases_from_deaths are comparing it to the libraries listed below
Sorting:
- ☆10Sep 30, 2025Updated 4 months ago
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆11Oct 30, 2023Updated 2 years ago
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- A Bayesian model for time-series count data with weekend effects and a lagged reporting process☆10Mar 7, 2022Updated 3 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Jun 14, 2022Updated 3 years ago
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆14Feb 19, 2025Updated 11 months ago
- Humanitarian Exchange Language (HXL standard) in R☆13Apr 20, 2018Updated 7 years ago
- Applied category theory applied to epidemiological models☆12Aug 7, 2024Updated last year
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Sep 10, 2024Updated last year
- Influpaint : Inpainting denoising diffusion probabilistic models for infectious disease (such as influenza) forecasting☆16Jan 29, 2026Updated 2 weeks ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Aug 31, 2022Updated 3 years ago
- Additional censored event tools for Distributions.jl☆14Feb 4, 2026Updated last week
- Some code for monkeypox☆10Jan 24, 2023Updated 3 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11Apr 8, 2025Updated 10 months ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 4 months ago
- Restrict Help Files to Development☆31Sep 23, 2024Updated last year
- An R package implementing an idiosyncratic Stan workflow☆15Aug 18, 2022Updated 3 years ago
- Short course on parametric survival analysis☆15Nov 22, 2024Updated last year
- Compile Stan models to WebAssembly.☆15May 14, 2023Updated 2 years ago
- An R package for Bayes Linear emulation and history matching.☆18Dec 1, 2025Updated 2 months ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13May 18, 2022Updated 3 years ago
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆13Aug 11, 2022Updated 3 years ago
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Apr 6, 2023Updated 2 years ago
- Data Dump (CSV) of COVID-19 Data from the Philippines' Department of Health☆14Apr 23, 2020Updated 5 years ago
- Course on nowcasting and forecasting of infectious disease dynamics☆23Feb 9, 2026Updated last week
- Bayesian Inference of Complex Panel Data☆37Feb 1, 2026Updated 2 weeks ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Dec 18, 2022Updated 3 years ago
- Tools for working with version-controlled data science workflows☆16May 2, 2025Updated 9 months ago
- The official implementation of Non-separable Spatio-temporal Graph Kernels via SPDEs.☆16Jun 2, 2022Updated 3 years ago
- Style data.table according to the opinions of TheDataCollective☆15Feb 1, 2023Updated 3 years ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Nov 11, 2025Updated 3 months ago
- Gaussian processes on graphs and lattices in Stan.☆19Mar 17, 2025Updated 11 months ago
- API Client and Data Munging for the Demographic and Health Survey Data☆38Feb 27, 2025Updated 11 months ago
- Tools for evolutionary forecasting☆14Feb 9, 2026Updated last week
- Monte-Carlo State Space Models☆19Jul 1, 2024Updated last year
- This is LEMMA v0.2. Our development model is LEMMA v0.3:☆16May 1, 2020Updated 5 years ago
- Create Contact Matrices from Population Data☆20Updated this week
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17May 9, 2024Updated last year
- ☆15Aug 3, 2023Updated 2 years ago