BioContextAI Knowledgebase MCP server for biomedical agentic AI
☆28Jan 12, 2026Updated 6 months ago
Alternatives and similar repositories for knowledgebase-mcp
Users that are interested in knowledgebase-mcp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The BioContextAI Registry for biomedical MCP servers☆21Jul 3, 2026Updated 2 weeks ago
- Holy Bio MCP - Bringing together all your favorite agentic biotools under the same framework☆18Jul 14, 2025Updated last year
- A Python package for unsupervised analysis of spatial (prote)omics data.☆17Updated this week
- MCP server for single cell analysis☆12May 15, 2025Updated last year
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 🔬 Professional MCP server for biomedical literature research — 40 tools, multi-source search (PubMed, Europe PMC, CORE, OpenAlex), full-…☆22Jun 22, 2026Updated last month
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- Official MCP server implementation for accessing Open Targets Data☆36Jul 1, 2026Updated 2 weeks ago
- ☆18Mar 11, 2026Updated 4 months ago
- Registry for scverse ecosystem packages☆37Updated this week
- Nextflow version of Sopa - spatial omics pipeline and analysis☆18Updated this week
- Convert AI Skills (Claude Skills format) to MCP server resources - Part of BioContextAI☆27Feb 27, 2026Updated 4 months ago
- Build PharMeBINet from different sources.☆22Jul 14, 2026Updated last week
- ☆36Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- ☆30Oct 22, 2024Updated last year
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.☆17Updated this week
- The Agentic BioML Challenge + AutoBioML framework☆18Jun 3, 2025Updated last year
- Ruby on Rails with RDF capabilities☆11Sep 14, 2022Updated 3 years ago
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.☆15Jul 8, 2026Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆45Jun 11, 2026Updated last month
- An AnnData-based framework for integrated proteomics analysis☆28Jul 8, 2026Updated 2 weeks ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆143Jul 8, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆57Sep 8, 2025Updated 10 months ago
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆25Updated this week
- Connecting AI to biomedical data☆15May 14, 2026Updated 2 months ago
- This is the pipeline of our new article "Enzyme Co-Scientist: Harnessing Large Language Models for Enzyme Kinetic Data Extraction from Li…☆18May 23, 2025Updated last year
- Segment Anything for Histopathology☆69Jun 6, 2026Updated last month
- Python package for biodatafuse project.☆16Apr 22, 2026Updated 2 months ago
- Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.☆124Jun 30, 2026Updated 3 weeks ago
- ☆35Mar 30, 2025Updated last year
- A simple python SDK around PubMed API.☆23Jan 1, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Easily create Ruby class hierarchies that support nested attributes, type conversion, serialization, equality, and more.☆16Jul 16, 2025Updated last year
- Chromax is a breeding simulator based on JAX.☆10Jun 6, 2025Updated last year
- Official implementation of Panacea: A foundation model for clinical trial design, recruitment, search, and summarization.☆21Dec 24, 2024Updated last year
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Apr 30, 2026Updated 2 months ago
- Codebase for BioPathNet to predict links in biomedical knowledge graphs☆43Feb 19, 2026Updated 5 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 11 months ago
- Models and serializers for ontologies and related artifacts backed by 4store☆19Updated this week