BioContextAI Knowledgebase MCP server for biomedical agentic AI
☆30Jan 12, 2026Updated 8 months ago
Alternatives and similar repositories for knowledgebase-mcp
Users that are interested in knowledgebase-mcp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The BioContextAI Registry for biomedical MCP servers☆23Updated this week
- Holy Bio MCP - Bringing together all your favorite agentic biotools under the same framework☆20Jul 14, 2025Updated last year
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated last month
- MCP server for single cell analysis☆12May 15, 2025Updated last year
- MCP SDK v2 server for PubMed and multi-source biomedical research, with resilient search, full text, citations, and tenant-safe deploymen…☆28Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- Official MCP server implementation for accessing Open Targets Data☆37Jul 1, 2026Updated 2 months ago
- ☆20Mar 11, 2026Updated 6 months ago
- Registry for scverse ecosystem packages☆39Updated this week
- Facilitating the use of Deep Visual Proteomics☆17Updated this week
- Convert AI Skills (Claude Skills format) to MCP server resources - Part of BioContextAI☆28Feb 27, 2026Updated 6 months ago
- ☆103Updated this week
- Build PharMeBINet from different sources.☆22Jul 14, 2026Updated 2 months ago
- ☆38Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Babel creates cliques of equivalent identifiers across many biomedical vocabularies.☆18Sep 11, 2026Updated last week
- The Agentic BioML Challenge + AutoBioML framework☆18Jun 3, 2025Updated last year
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.☆16Aug 26, 2026Updated 3 weeks ago
- An AnnData-based framework for integrated proteomics analysis☆30Sep 7, 2026Updated last week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆158Updated this week
- ☆58Sep 8, 2025Updated last year
- Connecting AI to biomedical data☆15May 14, 2026Updated 4 months ago
- Segment Anything for Histopathology☆74Jun 6, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell perturbation analysis☆345Updated this week
- Python package for biodatafuse project.☆15Apr 22, 2026Updated 4 months ago
- Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.☆148Updated this week
- ☆35Mar 30, 2025Updated last year
- A simple python SDK around PubMed API.☆23Jan 1, 2025Updated last year
- Academic paper downloader skill: Scopus search + Unpaywall primary + optional Sci-Hub fallback☆28Feb 9, 2026Updated 7 months ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Sep 1, 2026Updated 2 weeks ago
- Official implementation of Panacea: A foundation model for clinical trial design, recruitment, search, and summarization.☆21Dec 24, 2024Updated last year
- Codebase for BioPathNet to predict links in biomedical knowledge graphs☆43Feb 19, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- Multimodal Data (.h5mu) implementation for Python☆134Updated this week
- Models and serializers for ontologies and related artifacts backed by 4store☆19Sep 8, 2026Updated last week
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- MCP (Model Context Protocol) server for biothings☆34Nov 3, 2025Updated 10 months ago
- Generative Pretrained Autoregressive Transformer Graph Neural Network applied to the Analysis and Discovery of Materials☆16Aug 9, 2023Updated 3 years ago
- A specialized LLM for study search, study screening, and data extraction from medical literature.☆33Jul 17, 2026Updated 2 months ago