For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
☆95Jul 20, 2026Updated this week
Alternatives and similar repositories for seek
Users that are interested in seek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 5 months ago
- Toolkit for Modelling and Simulation of Gene Expressions and Metabolism☆13Apr 1, 2026Updated 3 months ago
- Prion-Like Amino Acid Composition☆18Dec 15, 2025Updated 7 months ago
- Metabolome Annotation Workflow☆26Oct 31, 2025Updated 8 months ago
- DEPRECATED. See askomics/flaskomics☆21Jan 16, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Universal Modeling Language for Metabolic Flux Analysis☆12Mar 6, 2025Updated last year
- "Open-source Dropbox" with added description features. It is a data storage and description platform designed to help researchers and oth…☆28Oct 12, 2022Updated 3 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- Python library for RO-Crate☆86Jul 10, 2026Updated last week
- Research Object Crate☆151Jul 2, 2026Updated 2 weeks ago
- CODO is an ontology for the semantic representation and annotation of COVID-19 data in a machine-readable form for tracking history of th…☆10Apr 19, 2022Updated 4 years ago
- The source code for the new version of the EMBL-EBI BioSamples database☆16Apr 16, 2026Updated 3 months ago
- A simplified python interface to COPASI.☆28Jun 15, 2026Updated last month
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- JSON validator derived from AJV supporting ontology and taxonomy validation.☆23May 22, 2025Updated last year
- Repository of standardized biological experimental data and metadata☆16Jan 9, 2025Updated last year
- A tutorial for the ROBOT command line tool.☆17Sep 24, 2022Updated 3 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- Rebuild of AskOmics☆14Jun 30, 2026Updated 3 weeks ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jul 6, 2026Updated 2 weeks ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆29Sep 3, 2024Updated last year
- “Open terminals”, “load CSVs”, “start hacking”☆16May 2, 2017Updated 9 years ago
- DBCLS RDFizing database guidelines☆16Aug 31, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- C++ implementation of SBOL 2.3.2☆17Oct 13, 2020Updated 5 years ago
- Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.☆22Feb 9, 2026Updated 5 months ago
- RightField is an open-source tool for adding ontology term selection to Excel spreadsheets. RightField is used by a 'Template Creator' to…☆32Apr 10, 2025Updated last year
- breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitution…☆11Jul 1, 2026Updated 3 weeks ago
- IPython running in a docker container. This image can be used to integrate IPython into Galaxy☆17Mar 15, 2016Updated 10 years ago
- The extension for Sphinx documentation projects that handles redirects for moved pages. Based on the its configuration, the extension gen…☆16Feb 27, 2026Updated 4 months ago
- Curation and analysis of metabolic models☆36Aug 8, 2023Updated 2 years ago
- As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.☆12Jul 30, 2020Updated 5 years ago
- ☆15May 8, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Linked data registry - core application and example UI☆24Jun 11, 2026Updated last month
- Repository for version control of the BrAPI specifications☆75Updated this week
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 7 months ago
- OMERO Docker compose example☆28Dec 6, 2025Updated 7 months ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- Web based Registry platform for managing synthetic biological parts☆44May 16, 2024Updated 2 years ago