For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
☆91Mar 20, 2026Updated last week
Alternatives and similar repositories for seek
Users that are interested in seek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 2 months ago
- A Python package to validate RO-Crates☆23Feb 19, 2026Updated last month
- Toolkit for Modelling and Simulation of Gene Expressions and Metabolism☆13Updated this week
- Prion-Like Amino Acid Composition☆18Dec 15, 2025Updated 3 months ago
- A simplified python interface to COPASI.☆25Mar 19, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A Universal Modeling Language for Metabolic Flux Analysis☆12Mar 6, 2025Updated last year
- Flexible Jekyll theme using bootstrap 5 as CSS framework.☆25Mar 16, 2026Updated last week
- DEPRECATED. See askomics/flaskomics☆21Jan 16, 2020Updated 6 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Aug 21, 2024Updated last year
- "Open-source Dropbox" with added description features. It is a data storage and description platform designed to help researchers and oth…☆28Oct 12, 2022Updated 3 years ago
- Python library for RO-Crate☆80Feb 3, 2026Updated last month
- The source code for the new version of the EMBL-EBI BioSamples database☆16Mar 19, 2026Updated last week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- A collaborative notebook for genes and genomes☆13Mar 13, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Repository of standardized biological experimental data and metadata☆16Jan 9, 2025Updated last year
- JSON validator derived from AJV supporting ontology and taxonomy validation.☆21May 22, 2025Updated 10 months ago
- REplicated STORagE☆13Mar 23, 2023Updated 3 years ago
- A tutorial for the ROBOT command line tool.☆17Sep 24, 2022Updated 3 years ago
- Research Object Crate☆130Mar 11, 2026Updated 2 weeks ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Mar 9, 2026Updated 2 weeks ago
- 1000 Genomes Project population visualizations using dimensionality reduction☆11Dec 8, 2022Updated 3 years ago
- Validate and submit reads using Webin-CLI in batch.☆11Aug 3, 2023Updated 2 years ago
- Python package for working with PEtab files☆16Mar 18, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- DBCLS RDFizing database guidelines☆16Aug 31, 2024Updated last year
- Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.☆22Feb 9, 2026Updated last month
- IPython running in a docker container. This image can be used to integrate IPython into Galaxy☆17Mar 15, 2016Updated 10 years ago
- Linked data registry - core application and example UI☆24Mar 10, 2026Updated 2 weeks ago
- Material for a training on AI tools☆18Feb 3, 2026Updated last month
- C++ implementation of SBOL 2.3.2☆17Oct 13, 2020Updated 5 years ago
- As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.☆12Jul 30, 2020Updated 5 years ago
- Curation and analysis of metabolic models☆36Aug 8, 2023Updated 2 years ago
- breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitution…☆11Mar 12, 2026Updated 2 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- KnetMiner - webapp to search and visualize genome-scale knowledge graphs☆29Sep 18, 2025Updated 6 months ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- OMERO Docker compose example☆29Dec 6, 2025Updated 3 months ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆13Nov 5, 2025Updated 4 months ago
- IN OUT MANAGEMENT SYSTEM☆11Mar 18, 2025Updated last year
- Stanford IRT/RIT base DICOM anonymization scripts. READ DISCLAIMER.☆21Feb 12, 2026Updated last month
- Semantic faceted search using SPARQL☆19May 18, 2018Updated 7 years ago