Pan-Genome Analysis Pipeline
☆37Aug 6, 2026Updated 2 months ago
Alternatives and similar repositories for PGAP2
Users that are interested in PGAP2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 3 months ago
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated 3 months ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 4 months ago
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆19Jun 16, 2026Updated 3 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Population analysis PIPEline 🛠🧬☆28Mar 2, 2026Updated 7 months ago
- Genome browser 🧬👀🚀☆35Aug 24, 2026Updated last month
- An ultra-fast and accurate tool for KEGG Orthology (KO) assignment, powered by deep learning.☆24Aug 24, 2026Updated last month
- ☆18Jun 5, 2026Updated 4 months ago
- A genome diagram generator for microbes and organelles☆155Updated this week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆39Aug 21, 2026Updated last month
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆34Dec 4, 2025Updated 10 months ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆29Jun 14, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An updated pipeline for pangenome investigation☆375Jul 2, 2026Updated 3 months ago
- Correcting errors in noisy long reads using variation graphs☆53Nov 17, 2022Updated 3 years ago
- Assembly of Nanopore Sequencing☆17Updated this week
- ☆27Apr 20, 2023Updated 3 years ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 7 months ago
- ☆10Sep 4, 2024Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 4 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆55May 16, 2026Updated 4 months ago
- Support scripts for the visualisation of pangenome analyses in Graphia☆21Oct 7, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆67Sep 14, 2024Updated 2 years ago
- Development version of Easyfig☆110Dec 21, 2023Updated 2 years ago
- ☆38Apr 15, 2024Updated 2 years ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 7 months ago
- ☆22Sep 30, 2026Updated last week
- IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.☆29Sep 30, 2026Updated last week
- Systematic search of all known anti-phage systems.☆187Sep 1, 2026Updated last month
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆32Sep 1, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Multi-genome synteny block visualization tool☆67Oct 2, 2026Updated last week
- Find clustered hits from a BLAST search☆150Aug 6, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆683Aug 7, 2026Updated 2 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆226Updated this week
- Modeling strain-level variation by gene, phylogeny, or pathway☆14Aug 6, 2026Updated 2 months ago