Alternatives and similar repositories for mutational-semantics-neurips2020

Users that are interested in mutational-semantics-neurips2020 are comparing it to the libraries listed below

• brianhie / uncertainty
  Learning with uncertainty for biological discovery and design
  ☆34Updated 2 years ago
• amirmohan / epistatic-net
  Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…
  ☆18Updated 3 years ago
• genedisco / genedisco
  GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.
  ☆38Updated last year
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• debbiemarkslab / variational-synthesis
  Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…
  ☆34Updated 3 years ago
• sokrypton / seqmodels
  ☆31Updated 4 years ago
• google-research / slip
  SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
  ☆19Updated last year
• liudan111 / PLM-interact
  PLM-interact: extending protein language models to predict protein-protein interactions.
  ☆21Updated 6 months ago
• alrojo / UniLanguage
  Homology reduced UniProt, train-/valid-/testsets for language modeling
  ☆17Updated 3 years ago
• EleutherAI / mp_nerf
  Massively-Parallel Natural Extension of Reference Frame
  ☆31Updated 2 years ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆40Updated last year
• JaesikKim / HiG2Vec
  ☆23Updated 2 years ago
• salesforce / genhance
  ☆34Updated last month
• hypnopump / rgn2-replica
  Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1
  ☆37Updated 3 years ago
• oxpig / saab_plus
  ☆25Updated 5 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated 10 months ago
• prescient-design / cortex
  A Modular Architecture for Deep Learning Systems
  ☆41Updated last month
• Vincentx15 / Equi-RC
  Equivariant layers for RC-complement symmetry in DNA sequence data
  ☆11Updated 3 years ago
• alex-hh / deep-protein-generation
  ☆58Updated 2 years ago
• songlab-cal / mogwai
  ☆25Updated 3 years ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• HeliXonProtein / proximal-exploration
  PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"
  ☆36Updated last year
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆37Updated 2 years ago
• wangshenguiuc / set2gaussian
  code repo for Set2Gaussian
  ☆15Updated 5 years ago
• leojklarner / Q-SAVI
  Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions
  ☆24Updated last year
• aqlaboratory / pnerf
  ☆36Updated 5 years ago
• IBM / fold2seq
  Code for Fold2Seq paper from ICML 2021
  ☆50Updated 3 years ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆49Updated 7 months ago
• collinarnett / protein_gan
  Implementation of "Generative Modeling for Protein Structures" by Namrata Anand and Po-Ssu Huang
  ☆19Updated 3 years ago