boulderrinnlab / CLASS_2023Links
☆20Updated 2 years ago
Alternatives and similar repositories for CLASS_2023
Users that are interested in CLASS_2023 are comparing it to the libraries listed below
Sorting:
- Tutorial for AMSI BioInfoSummer 2018☆30Updated 6 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- ☆73Updated 3 years ago
- My youtube programming scripts☆58Updated 10 months ago
- Generate IGV style locus tracks from bigWig files in R☆173Updated last year
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆84Updated 3 months ago
- ☆63Updated last year
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆121Updated 5 years ago
- Basic workflow for ATAC-seq analysis☆90Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated last month
- RNA-Seq analysis workflow☆105Updated 4 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Code and data repository for the 2020 physalia course on single cell RNA sequencing.☆58Updated 5 years ago
- DNA methylation analysis notes from Ming Tang☆91Updated 6 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆117Updated 2 years ago
- Simplify functional enrichment results☆118Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆117Updated 4 months ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆104Updated 3 weeks ago
- Visualizing transcript structure and annotation using ggplot2☆162Updated last year
- published papers with a lot of data☆74Updated 7 months ago
- ☆99Updated last month
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆112Updated this week
- Tutorials on accessing public reference and genomic data☆30Updated 9 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/☆101Updated 3 years ago
- ☆56Updated 2 weeks ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 10 months ago