boulderrinnlab / CLASS_2023Links
☆20Updated 2 years ago
Alternatives and similar repositories for CLASS_2023
Users that are interested in CLASS_2023 are comparing it to the libraries listed below
Sorting:
- My youtube programming scripts☆59Updated 11 months ago
- ☆63Updated last year
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆121Updated 5 years ago
- ☆73Updated 3 years ago
- Code and data repository for the 2020 physalia course on single cell RNA sequencing.☆59Updated 5 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- Easily install and load packages from the tidyomics ecosystem☆72Updated 2 months ago
- Generate IGV style locus tracks from bigWig files in R☆175Updated last year
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Tutorial for AMSI BioInfoSummer 2018☆30Updated 7 years ago
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆85Updated 5 months ago
- Visualizing transcript structure and annotation using ggplot2☆164Updated last year
- ☆56Updated 3 weeks ago
- published papers with a lot of data☆74Updated 9 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated last month
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆117Updated 3 weeks ago
- Integrative pathway enrichment analysis of multivariate omics data☆118Updated 5 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- Simplify functional enrichment results☆121Updated last year
- Basic workflow for ATAC-seq analysis☆92Updated last year
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆81Updated last week
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 2 years ago
- The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/☆101Updated 3 years ago
- Tutorials on accessing public reference and genomic data☆30Updated 10 months ago
- This RNAseq data analysis tutorial is created for educational purpose☆34Updated 3 months ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis☆29Updated last year