bonohu / SAQELinks
Systematic Analysis for Quantification of Expression
☆13Updated last year
Alternatives and similar repositories for SAQE
Users that are interested in SAQE are comparing it to the libraries listed below
Sorting:
- Python programs for processing GFF3 files☆102Updated 3 weeks ago
- Dfam Transposable Element Tools Docker container.☆101Updated 3 weeks ago
- NLR annotation tool☆35Updated last year
- Workflow for Building Microsynteny Networks☆58Updated 3 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆85Updated 3 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆60Updated this week
- accurate LiftOver tool for new genome assemblies☆146Updated last year
- a tool for inferring species tree from sequencing reads☆156Updated last month
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆25Updated 3 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆175Updated 3 weeks ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆109Updated 7 months ago
- Best practices and workflow for genome annotation☆79Updated 8 months ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Updated this week
- source code for EVM☆120Updated last year
- List of genome assembly tools☆89Updated last week
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆110Updated 4 months ago
- NLR-Annotator upload☆76Updated 2 years ago
- Constructing a pangenome gene graph☆203Updated 5 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆118Updated last month
- A fully automated gene annotator from RNA-Seq expression data☆61Updated 2 years ago
- A program for detection of tRNA genes☆80Updated 3 years ago
- Variant calling tool for long-read sequencing data☆116Updated 9 months ago
- SV detection tool for nanopore sequence reads☆97Updated this week
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 5 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆105Updated 7 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆111Updated 6 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Tiberius is a deep learning gene finder.☆87Updated this week
- Version 5 of the CAFE phylogenetics software☆158Updated 10 months ago
- ☆85Updated last year