clips / humumlsLinks
UMLS in Python with MongoDB.
☆18Updated 6 years ago
Alternatives and similar repositories for humumls
Users that are interested in humumls are comparing it to the libraries listed below
Sorting:
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 5 years ago
- ☆73Updated last year
- Abbreviation definition dection library trained on PubMed abstracts☆49Updated 5 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 3 months ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 5 years ago
- ☆98Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated last week
- Load all concepts and relationships from UMLS into a Neo4j database☆11Updated 4 years ago
- Miscellaneous tools for clinical ML☆29Updated 7 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- A convolutional neural network model for relation extraction.☆12Updated 2 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Updated 2 years ago
- An ontology matcher for matching entities between knowledgebases☆69Updated 2 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 5 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 3 years ago
- This repository contains machine learning related work for the corpus to graph project, including Jupyter research notebooks and a Flask …☆46Updated 8 years ago
- Bio-YODIE is GATE's biomedical named entity linking pipeline.☆17Updated 5 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago
- Conversion from brat-flavored standoff to CoNLL format☆53Updated 4 years ago
- PAL: A tool for Pre-annotation and Active Learning☆18Updated 4 years ago
- A simple REST-server around ctakes clinical pipeline.☆30Updated 8 years ago
- Named Entity Recognition for biomedical entities☆48Updated 2 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆333Updated 3 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 6 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- ☆99Updated 3 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 6 years ago