clips / humumlsLinks
UMLS in Python with MongoDB.
☆18Updated 6 years ago
Alternatives and similar repositories for humumls
Users that are interested in humumls are comparing it to the libraries listed below
Sorting:
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 5 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 5 years ago
- Miscellaneous tools for clinical ML☆29Updated 7 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 2 weeks ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 5 years ago
- Negation detection NLP tool. If you use the code, please cite George Gkotsis, Sumithra Velupillai, Anika Oellrich, Harry Dean,…☆55Updated 8 years ago
- Medical Similarity Dataset creation from SNOMED☆28Updated 2 years ago
- An ontology matcher for matching entities between knowledgebases☆68Updated 2 years ago
- Medical Relations and Entities Extraction☆36Updated 2 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- Disambiguating biomedical and clinical concepts with word embeddings☆14Updated 7 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 6 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆48Updated 4 years ago
- Neural Network for Automatic Negation Detection☆20Updated 8 years ago
- An active annotation tool based on brat(https://github.com/nlplab/brat)☆19Updated 7 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- ☆98Updated 3 years ago
- An information extraction system for free-text eligibility criteria☆37Updated 6 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 3 years ago
- Load all concepts and relationships from UMLS into a Neo4j database☆11Updated 4 years ago
- Clinical spelling correction with word and character n-gram embeddings.☆74Updated 2 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Generating text from RDF data with sequence to sequence models☆12Updated 6 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated 3 months ago
- Extract annotated misspellings from MIMIC-III.☆12Updated 4 years ago
- Utility for cui2vec in Go☆12Updated 2 years ago
- Bio-YODIE is GATE's biomedical named entity linking pipeline.☆17Updated 5 years ago