clips / humumlsLinks
UMLS in Python with MongoDB.
☆18Updated 6 years ago
Alternatives and similar repositories for humumls
Users that are interested in humumls are comparing it to the libraries listed below
Sorting:
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 5 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 5 years ago
- ☆74Updated last year
- A convolutional neural network model for relation extraction.☆12Updated 2 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 5 months ago
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago
- Miscellaneous tools for clinical ML☆29Updated 8 years ago
- PAL: A tool for Pre-annotation and Active Learning☆18Updated 4 years ago
- An ontology matcher for matching entities between knowledgebases☆70Updated 2 years ago
- Flexible and powerful platform for biomedical information extraction from text☆39Updated 8 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 3 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆158Updated 2 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- ☆98Updated 2 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 5 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆49Updated 5 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- Conversion from brat-flavored standoff to CoNLL format☆55Updated 4 years ago
- ☆101Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated last month
- spaCy pipeline component for generating spaCy KnowledgeBase Alias Candidates for Entity Linking☆86Updated 3 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆46Updated 5 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 6 years ago
- ☆15Updated 5 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 6 years ago
- Medical Relations and Entities Extraction☆37Updated 3 years ago
- Load all concepts and relationships from UMLS into a Neo4j database☆12Updated 4 years ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Updated 2 years ago