amazon-science / nl2sql-omop-cdmLinks
Natural Language to SQL Queries in the OMOP CDM Datasets
☆12Updated 2 years ago
Alternatives and similar repositories for nl2sql-omop-cdm
Users that are interested in nl2sql-omop-cdm are comparing it to the libraries listed below
Sorting:
- NERO-nlp is a PyPI package for biomedical Named Entity (Recognition) Ontology☆12Updated 4 years ago
- FHIR Ontop OMOP Implementation☆20Updated last year
- using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)☆10Updated 2 years ago
- An application to interact with your FHIR API's using natural language query☆15Updated 2 years ago
- ☆23Updated 2 years ago
- ☆14Updated 3 years ago
- A repository of all code and resources of my published blog articles.☆34Updated 2 months ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆44Updated last year
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!☆47Updated last week
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆14Updated 4 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32Updated last year
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Updated 2 years ago
- Transform the OMOP model to graph model☆23Updated 8 months ago
- General tutorials for the setup and use of MedCAT.☆39Updated 3 months ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆84Updated this week
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- A generator of synthetic psychiatric notes.☆17Updated 5 years ago
- Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J☆16Updated last year
- Runtime repository for the SNOMED CT Entity Linking challenge on DrivenData☆14Updated last year
- Biomedical Data-to-Text Generation via Fine-Tuning Transformers☆29Updated 3 years ago
- Training materials for Vocabulary & CDM Tutorial.☆21Updated 5 years ago
- ☆29Updated 7 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆40Updated last year
- UMLS Graph database for semantic queries☆23Updated 2 years ago
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- ☆14Updated 5 months ago
- jayetri / DrugEHRQA-A-Question-Answering-Dataset-on-Structured-and-Unstructured-Electronic-Health-Records☆10Updated 2 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 3 years ago
- LLM Embeddings for ICD 10 Data☆54Updated 8 months ago
- Parse Symcat (http://www.symcat.com) symptoms and conditions and generate valid Synthea (https://github.com/synthetichealth/synthea) modu…☆15Updated 4 years ago