opensafely / codelist-developmentLinks
Repository for discussion of OpenSAFELY codelists
☆10Updated last year
Alternatives and similar repositories for codelist-development
Users that are interested in codelist-development are comparing it to the libraries listed below
Sorting:
- FHIR Ontop OMOP Implementation☆20Updated last year
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆15Updated 5 years ago
- Provides backbone infrastructure elements for OHNLP toolsets.☆14Updated 8 months ago
- Representation of Clinical Practice Guideline Recommendations in FHIR☆18Updated 8 months ago
- Streamlined Data Mapping to OMOP☆19Updated last week
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆93Updated 2 years ago
- An ETL pipeline to transform your EMP data to OMOP.☆14Updated 3 months ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- UMLS to SNOMED CT and ICD-10 mapping tool: A Python script for generating JSON files containing mappings between UMLS CUIs and SNOMED CT …☆15Updated 2 years ago
- A modern, lightweight medication sig parser.☆12Updated last year
- A tutorial for the ROBOT command line tool.☆18Updated 3 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆34Updated 2 years ago
- Snow Owl Terminology Server. This version is no longer maintained. Please use the upstream version or the alternate Snowstorm Terminology…☆11Updated 5 years ago
- CDM Builder leveraging AWS Lambda☆20Updated 2 weeks ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆44Updated last year
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆41Updated last year
- ☆13Updated 2 weeks ago
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 4 months ago
- Data Ingestion and Harmonization☆46Updated 3 months ago
- Sample relational database load scripts and SQL queries for processing SNOMED CT-AU RF2 release files.☆18Updated last year
- ETL Tool for converting datasets to OMOP CDM☆35Updated 3 years ago
- OntoBrowser is a web-based application for managing ontologies☆44Updated 2 years ago
- HMTL & Javascript for the front end for the SNOMED CT Browser.☆95Updated this week
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated 2 years ago
- Training materials for Vocabulary & CDM Tutorial.☆22Updated 6 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆43Updated last year
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 4 years ago
- Transform the OMOP model to graph model☆27Updated last year
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆70Updated 8 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago