trakem2 / TrakEM2Links
ImageJ plugin for morphological data mining, 3D modeling and image stitching, registration, editing and annotation.
☆33Updated 3 months ago
Alternatives and similar repositories for TrakEM2
Users that are interested in TrakEM2 are comparing it to the libraries listed below
Sorting:
- Fiji library to perform image segmentation based on the Weka learning schemes☆121Updated last year
- www.vaa3d.org☆80Updated 7 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- TensorFlow Deconvolution for Microscopy Data☆91Updated 3 years ago
- The python-microscopy environment - an open-source package for light microscopy☆95Updated this week
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- Microscopy Image Stitching Tool☆158Updated 5 months ago
- Accelerating Single Molecule Localization Microscopy with Deep Learning☆53Updated 2 years ago
- The U-Net Segmentation plugin for Fiji (ImageJ)☆90Updated 3 years ago
- The ImageJ plugin to run deep-learning models☆97Updated 2 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated 2 months ago
- ImJoy: Deep Learning Made Easy!☆190Updated 2 years ago
- Collection of mathematical morphology methods and plugins for ImageJ☆111Updated last week
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆77Updated last month
- Aligner for large scale serial section image data☆16Updated 2 years ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆64Updated 10 months ago
- Java (ImageJ/Fiji) software package for 3D deconvolution microscopy☆63Updated 6 years ago
- ImageJ2 programming examples☆194Updated 2 years ago
- ☆40Updated 5 years ago
- ilastik-shell, applets, and workflows to string them together.☆386Updated this week
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆36Updated 3 months ago
- STORM movie analysis code☆122Updated last year
- Visualize, share and annotate your large 3D images online☆162Updated this week
- Simple Maven project for an ImageJ 1.x plugin☆35Updated 3 years ago
- ImageJ-specific applications of the SciJava script languages☆27Updated 2 months ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆157Updated last month
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆46Updated 2 months ago
- ImageJ Ops: "Write once, run anywhere" image processing☆92Updated last year
- OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological …☆214Updated 3 weeks ago
- A collection of tools for painting super-resolution images☆137Updated 2 weeks ago