trakem2 / TrakEM2
ImageJ plugin for morphological data mining, 3D modeling and image stitching, registration, editing and annotation.
☆31Updated 4 months ago
Alternatives and similar repositories for TrakEM2:
Users that are interested in TrakEM2 are comparing it to the libraries listed below
- ImgLib2/BDV implementation of Stitching for large datasets☆69Updated this week
- ☆21Updated 3 years ago
- sciview is a tool for visualization and interaction with ND image and mesh data☆68Updated last week
- GPU-accelerated image processing for everyone☆50Updated 6 months ago
- Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data☆24Updated this week
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- Fiji library to perform image segmentation based on the Weka learning schemes☆113Updated 4 months ago
- ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection☆24Updated 3 months ago
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆74Updated 3 months ago
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆19Updated last week
- A general illumination correction method for optical microscopy.☆37Updated 3 years ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆29Updated 3 weeks ago
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆12Updated 2 years ago
- TensorFlow Deconvolution for Microscopy Data☆90Updated 2 years ago
- Accelerating Single Molecule Localization Microscopy with Deep Learning☆50Updated last year
- ☆40Updated 4 years ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆55Updated 3 years ago
- PSFj - Know your microscope fluorescence☆21Updated 4 years ago
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆44Updated last year
- Java (ImageJ/Fiji) software package for 3D deconvolution microscopy☆54Updated 5 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- CLIJ is deprecated. Visit CLIJ2☆56Updated 3 years ago
- www.vaa3d.org☆79Updated 6 years ago
- Montaging for microscopy imaging files☆27Updated this week
- The ImageJ plugin to run deep-learning models☆88Updated this week
- A napari plugin for itk-elastix☆38Updated 7 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 5 months ago
- The python-microscopy environment - an open-source package for light microscopy☆85Updated last month
- Create 3D/4D animations using a natural language-based syntax☆58Updated last year
- Legacy project superseded by https://github.com/morphonets/SNT☆11Updated 3 years ago