trakem2 / TrakEM2Links
ImageJ plugin for morphological data mining, 3D modeling and image stitching, registration, editing and annotation.
☆32Updated 11 months ago
Alternatives and similar repositories for TrakEM2
Users that are interested in TrakEM2 are comparing it to the libraries listed below
Sorting:
- Fiji library to perform image segmentation based on the Weka learning schemes☆118Updated 11 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Microscopy Image Stitching Tool☆151Updated 2 weeks ago
- The python-microscopy environment - an open-source package for light microscopy☆91Updated last month
- www.vaa3d.org☆79Updated 7 years ago
- Collection of mathematical morphology methods and plugins for ImageJ☆108Updated 2 months ago
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆74Updated 3 weeks ago
- Accelerating Single Molecule Localization Microscopy with Deep Learning☆51Updated 2 years ago
- The U-Net Segmentation plugin for Fiji (ImageJ)☆88Updated 2 years ago
- TensorFlow Deconvolution for Microscopy Data☆90Updated 3 years ago
- ImJoy: Deep Learning Made Easy!☆188Updated last year
- The ImageJ plugin to run deep-learning models☆98Updated last month
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆35Updated 2 months ago
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆76Updated last month
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆44Updated last month
- ImageJ2 programming examples☆189Updated 2 years ago
- Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher☆23Updated last year
- Java (ImageJ/Fiji) software package for 3D deconvolution microscopy☆62Updated 6 years ago
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆46Updated 6 months ago
- ImageJ Ops: "Write once, run anywhere" image processing☆90Updated last year
- ilastik-shell, applets, and workflows to string them together.☆380Updated this week
- ☆40Updated 5 years ago
- ImageJ-specific applications of the SciJava script languages☆27Updated 9 months ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆61Updated 5 months ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆55Updated 2 months ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆27Updated 5 years ago
- GPU accelerated 3D image deconvolution using CUDA☆36Updated last year
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆86Updated last year
- A napari plugin for itk-elastix☆39Updated last year