BlueBrain / VessMorphoVisLinks
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels) morphologies.
☆48Updated last year
Alternatives and similar repositories for VessMorphoVis
Users that are interested in VessMorphoVis are comparing it to the libraries listed below
Sorting:
- An open-source application for the analysis and visualization of segmented vasculature datasets☆121Updated last year
- MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit☆99Updated last year
- Very fast greedy diffeomorphic registration code☆81Updated 4 months ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆51Updated last year
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, …☆54Updated 5 months ago
- Convert NIfTI volume to triangulated mesh using marching cubes☆173Updated 4 months ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆169Updated 2 weeks ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆50Updated 3 years ago
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution☆15Updated last year
- Python-based software utilizing deep learning techniques to segment high-resolution time-of-flight MRI angiography data with high sensiti…☆22Updated this week
- MIRTK based SVR reconstruction☆58Updated 5 months ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆165Updated 3 months ago
- MATLAB code to derive the network graph of a 3D voxel skeleton☆25Updated 6 years ago
- ☆29Updated last year
- Vessel and tube centerline extraction☆34Updated 6 months ago
- Implementation of the DeepVesselNet deep learning network☆151Updated 2 years ago
- This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.☆54Updated last month
- Dynamic Susceptibility Contrast MRI toolbox - AIF selection, deconvolution and leakage correction☆14Updated 3 years ago
- NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.☆152Updated 3 years ago
- Version 2 of the minc-toolkit, uses tools based on ITK version 4.x☆53Updated 3 months ago
- A pipeline to extract vessels from MR images and perform analysis. Code to my TPAMI paper "Tracking the adaptation and compensation proce…☆29Updated 3 years ago
- Convert 3D NIfTI images (and other formats supported by ITK) to DICOM 2D series☆88Updated 8 years ago
- Recipes for common medical image segmentation tasks using 3D Slicer☆58Updated 3 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆70Updated 2 years ago
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆78Updated last year
- Python Vascular Network Analysis☆26Updated last month
- Utilities for reading and writing files created by 3D Slicer☆40Updated 7 months ago
- Python module for processing dynamic contrast enhanced magnetic resonance imaging (DCE-MRI) data☆31Updated 3 years ago
- ☆88Updated last year