BlueBrain / VessMorphoVis
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels) morphologies.
β44Updated last year
Alternatives and similar repositories for VessMorphoVis:
Users that are interested in VessMorphoVis are comparing it to the libraries listed below
- An open-source application for the analysis and visualization of segmented vasculature datasetsβ111Updated 11 months ago
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI spaceβ49Updated 2 years ago
- π¬π₯ Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumesβ47Updated 11 months ago
- MatlabBridge extension for 3D Slicerβ18Updated last year
- Very fast greedy diffeomorphic registration codeβ71Updated this week
- A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolutionβ12Updated last year
- MITK Diffusion - Official part of the Medical Imaging Interaction Toolkitβ92Updated 8 months ago
- A pipeline to extract vessels from MR images and perform analysis. Code to my TPAMI paper "Tracking the adaptation and compensation proceβ¦β29Updated 3 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learningβ70Updated 3 years ago
- TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, β¦β52Updated last month
- Utilities for reading and writing files created by 3D Slicerβ39Updated 3 months ago
- β18Updated last month
- Python Vascular Network Analysisβ23Updated last year
- Open library for LDDMM and Metamorphosis in PyTorchβ23Updated 3 weeks ago
- Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.β79Updated 2 months ago
- Statistical shape model of the heartβ45Updated 8 years ago
- β29Updated last year
- Convert NIfTI volume to triangulated mesh using marching cubesβ166Updated 2 weeks ago
- MATLAB code to derive the network graph of a 3D voxel skeletonβ25Updated 6 years ago
- Recipes for common medical image segmentation tasks using 3D Slicerβ55Updated 2 years ago
- Repository for Vesselness algorithmsβ47Updated 11 months ago
- Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registrationβ42Updated this week
- Various mri conversion/modification scriptsβ22Updated last year
- Multi-modal Image Registration And Connectivity anaLysisβ43Updated 2 weeks ago
- MIRTK based SVR reconstructionβ50Updated 3 weeks ago
- MATLAB code to calculate the 3D skeleton of a binary volume using parallel medial axis thinningβ46Updated 5 years ago
- This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.β53Updated 3 months ago
- 3D Image Skeletonization Toolsβ37Updated last year
- Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them completβ¦β5Updated 3 months ago
- Version 2 of the minc-toolkit, uses tools based on ITK version 4.xβ53Updated last month