Alternatives and similar repositories for training-material

Users that are interested in training-material are comparing it to the libraries listed below

• bgruening / docker-galaxy
  Docker Images tracking the stable Galaxy releases.
  ☆234Updated 9 months ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆197Updated 3 months ago
• peterjc / biopython_workshop
  A basic introduction to Biopython, intended for a classroom based workshop. Now on Codeberg.
  ☆225Updated 5 years ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆347Updated 3 weeks ago
• nextflow-io / patterns
  A curated collection of Nextflow implementation patterns
  ☆366Updated 2 years ago
• nextflow-io / training
  Nextflow training material
  ☆205Updated this week
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆386Updated 5 months ago
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆281Updated 4 years ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆445Updated 11 months ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆499Updated 5 years ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆397Updated last week
• melbournebioinformatics / melbournebioinformatics.github.io
  Melbourne Bioinformatics documentation in markdown format
  ☆120Updated this week
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆357Updated this week
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆400Updated 2 weeks ago
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆487Updated last week
• harvardinformatics / bioinformatics-coffee-hour
  Short lessons from FAS Informatics coffee hour
  ☆154Updated 2 years ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆405Updated 2 months ago
• nf-core / tools
  Python package with helper tools for the nf-core community.
  ☆283Updated this week
• galaxyproject / tools-iuc
  Tool Shed repositories maintained by the Intergalactic Utilities Commission
  ☆184Updated last week
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆520Updated 3 months ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆854Updated last year
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆349Updated last week
• veg / hyphy
  HyPhy: Hypothesis testing using Phylogenies
  ☆245Updated this week
• snakemake / snakemake-wrappers
  This is the development home of the Snakemake wrapper repository, see
  ☆237Updated this week
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆747Updated 4 months ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆591Updated last year
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆679Updated 5 months ago
• deweylab / RSEM
  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
  ☆456Updated last year
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆545Updated last week
• Shivi91 / Rosalind-1
  Solutions to Rosalind Bioinformatics Problems
  ☆74Updated 12 years ago