Alternatives and similar repositories for training-material

Users that are interested in training-material are comparing it to the libraries listed below

• bgruening / docker-galaxy
  Docker Images tracking the stable Galaxy releases.
  ☆233Updated 4 months ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆187Updated 2 months ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆423Updated 6 months ago
• galaxyproject / tools-iuc
  Tool Shed repositories maintained by the Intergalactic Utilities Commission
  ☆179Updated this week
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆487Updated 4 years ago
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆381Updated 3 weeks ago
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆337Updated this week
• peterjc / biopython_workshop
  A basic introduction to Biopython, intended for a classroom based workshop. Now on Codeberg.
  ☆220Updated 5 years ago
• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆504Updated last month
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆277Updated 3 years ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆399Updated 3 weeks ago
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆393Updated 2 months ago
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆464Updated 2 months ago
• melbournebioinformatics / MelBioInf_docs
  Melbourne Bioinformatics documentation in markdown format
  ☆115Updated last month
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆514Updated 4 months ago
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆503Updated 8 months ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆395Updated 2 months ago
• nextflow-io / patterns
  A curated collection of Nextflow implementation patterns
  ☆363Updated last year
• usadellab / Trimmomatic
  ☆257Updated last year
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆595Updated 7 months ago
• pcingola / SnpEff
  ☆279Updated 5 months ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆335Updated 3 weeks ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆826Updated last year
• s-andrews / FastQC
  A quality control analysis tool for high throughput sequencing data
  ☆517Updated last year
• sanger-pathogens / Artemis
  Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the…
  ☆248Updated last year
• harvardinformatics / bioinformatics-coffee-hour
  Short lessons from FAS Informatics coffee hour
  ☆152Updated 2 years ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆342Updated 11 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆633Updated last month
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆214Updated 3 months ago
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆544Updated last year