apple / ml-simplefoldLinks
☆900Updated 3 weeks ago
Alternatives and similar repositories for ml-simplefold
Users that are interested in ml-simplefold are comparing it to the libraries listed below
Sorting:
- Open source implementation of AlphaFold3☆1,023Updated last year
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆237Updated last month
- Protein and molecule viewer, editor, simulator☆124Updated this week
- A fully open source biomolecular structure prediction model based on AlphaFold3☆427Updated this week
- ☆765Updated 5 months ago
- Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders☆262Updated 2 weeks ago
- A short course on proteins and protein design aimed at early career students☆160Updated last year
- Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning☆688Updated this week
- BioNeMo Framework: For building and adapting AI models in drug discovery at scale☆570Updated this week
- Peptide Predictor - this program will annotate all proteins predicted to generate proteolytic cleavage products☆112Updated 3 months ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆652Updated 5 months ago
- Chai-1, SOTA model for biomolecular structure prediction☆1,812Updated 2 months ago
- A trainable PyTorch reproduction of AlphaFold 3.☆1,387Updated last week
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆120Updated last month
- Combinatorial antibiotic generation☆190Updated 3 weeks ago
- A generalized computational framework for biomolecular modeling.☆321Updated 3 weeks ago
- Hands-on AlphaFold implementation for educational purposes.☆94Updated 7 months ago
- Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch☆799Updated 3 weeks ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆495Updated 3 weeks ago
- Fast protein backbone generation with SE(3) flow matching.☆297Updated last year
- Protein language model customized for antibodies☆146Updated 7 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆156Updated 3 months ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆734Updated 2 weeks ago
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆99Updated last month
- A generative model for programmable protein design☆773Updated last year
- bioinformatics tools running on modal☆107Updated 2 weeks ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆556Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆267Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆218Updated 3 months ago
- ☆625Updated this week