Alternatives and similar repositories for QDSpy

Users that are interested in QDSpy are comparing it to the libraries listed below

• churchlandlab / WidefieldImager
  Pre-processing pipeline for widefield data
  ☆12Updated 4 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆32Updated 5 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆52Updated 2 years ago
• adamcohenlab / invivo-imaging
  Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)
  ☆15Updated 2 years ago
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆17Updated 2 months ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated last month
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆81Updated 10 months ago
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆13Updated last month
• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆152Updated 3 years ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆152Updated 2 weeks ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated 11 months ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆238Updated 6 months ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆178Updated 3 months ago
• ThomasAkam / Point_Grey_Bonsai_multi_camera_acquisition
  Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.
  ☆15Updated 7 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• cwindolf / dartsort
  ☆24Updated this week
• Aharoni-Lab / Miniscope-LFOV
  Large field-of-view miniature microscope for rats and larger animals.
  ☆17Updated 2 years ago
• llerussell / Naparm
  Control and design of two-photon photostimulation experiments
  ☆17Updated last year
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆46Updated 2 years ago
• neurojak / pySpinCapture
  a python wrapper to the FLIR PySpin API to capture synchronized video
  ☆24Updated 8 months ago
• arnefmeyer / mousecam
  A head-mounted camera system integrates detailed behavioral monitoring with multichannel electrophysiology in freely moving mice
  ☆28Updated 4 years ago
• churchlandlab / wfield
  Tools to process widefield data
  ☆12Updated 4 years ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆78Updated 6 months ago
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆40Updated 2 weeks ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆135Updated 3 months ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago