oist / optinist
calcium imaging pipeline tool
☆40Updated this week
Alternatives and similar repositories for optinist:
Users that are interested in optinist are comparing it to the libraries listed below
- Implemenation of Manifold Inference from Neural Dynamics (MIND) from Low & Lewallen et. al, '18☆27Updated 6 years ago
- Tutorials for learning NWB☆17Updated 2 years ago
- Region Of Interest Classification and Tracking☆18Updated this week
- NEural MOdelS, a statistical modeling framework for neuroscience.☆95Updated this week
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆65Updated this week
- Live Mouse Tracker analysis☆28Updated this week
- a visualization method for neural data☆216Updated last week
- Adaptive Platform for Neuroscience Experiments☆40Updated 2 months ago
- IaC codebase for the NeuroCAAS Platform☆37Updated last year
- Toolbox for analyzing behavioral videos and neural activity☆59Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated 2 months ago
- Python-based module with spike sorter wrappers and a simple API for running them.☆20Updated 3 years ago
- Papers : Biological and Artificial Neural Networks☆72Updated 4 years ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆32Updated 3 years ago
- pyControl GUI and framework code☆25Updated 2 weeks ago
- ☆51Updated 7 months ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆55Updated last year
- Fiber photometry data preprocessing - denoising, photobleaching and motion correction.☆26Updated last year
- miniscope analysis pipeline with interactive visualizations☆92Updated 8 months ago
- Deconvolution of calcium imaging data☆92Updated 2 months ago
- Distributed behavioral experiments☆93Updated last month
- Open-source, graph-based Python code generator and analysis toolbox for dynamical systems (pre-implemented and custom models). Most pre-i…☆79Updated 7 months ago
- Database for experimental neuroscience laboratories☆47Updated last month
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆39Updated 3 weeks ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆97Updated last week
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Examples of using MountainSort spike sorting software.☆27Updated 5 years ago
- Tools, algorithms, and frameworks for managing and analyzing neural data.☆20Updated 3 years ago
- A library that defines AIND data schema and validates JSON.☆25Updated this week
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆25Updated 2 years ago