calcium imaging pipeline tool
☆49Aug 18, 2025Updated 11 months ago
Alternatives and similar repositories for optinist
Users that are interested in optinist are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Jax implementation of normcorre☆15Jan 25, 2025Updated last year
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Dec 11, 2020Updated 5 years ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- NIU website on common software problems and their troubleshooting☆10Jul 14, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆10Mar 15, 2023Updated 3 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Anatomical space conventions made easy.☆12Updated this week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆23Jul 14, 2026Updated 3 weeks ago
- Build unbiased anatomical templates from individual images☆13Updated this week
- ☆11Oct 21, 2025Updated 9 months ago
- Fancier logging with python.☆16Updated this week
- A Python package to download neuronal morphologies☆17Aug 3, 2026Updated last week
- Re-usable GitHub Action scripts☆14Jul 29, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Derotate images acquired via multiphoton calcium imaging☆17Aug 3, 2026Updated last week
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated this week
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- Brainways☆24Aug 28, 2025Updated 11 months ago
- Python Neural Analysis Visualization☆19Jul 16, 2026Updated 3 weeks ago
- High-level spiking model definition and workflow framework☆20Aug 3, 2026Updated last week
- A package to manage electrophysiology analysis.☆23Aug 3, 2026Updated last week
- Creating the code base for All-active Model generation written on top of Bluepyopt☆17Dec 1, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Cell tracking for longitudinal calcium imaging recordings.☆18Dec 11, 2025Updated 7 months ago
- An R toolbox for analysing movement across space and time☆11Jun 29, 2026Updated last month
- brainglobe.info website☆14Updated this week
- Tools, algorithms, and frameworks for managing and analyzing neural data.☆21Mar 21, 2022Updated 4 years ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Dec 5, 2023Updated 2 years ago
- BIRDS plug-in on Fiji and attached jar package☆22Oct 7, 2021Updated 4 years ago
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- Mix-and-match computer vision tools for your animal behaviour analysis☆29Aug 3, 2026Updated last week
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast, volumetric cell detection. In development.☆24Jul 10, 2026Updated last month
- A gui for browsing joint calcium imaging + behavioral data.☆57Jan 22, 2025Updated last year
- Collection of tools to handle Neuropixel 1.0 and 2.0 data☆19Jul 24, 2026Updated 2 weeks ago
- Segmentation of anatomical structures in a common coordinate space☆36Updated this week
- Source code for the AnimalAI environment☆11Oct 1, 2019Updated 6 years ago
- ☆11Apr 10, 2023Updated 3 years ago
- pynapple collaborative data analysis (high level python scripts)☆39Dec 4, 2025Updated 8 months ago