oist / optinistLinks
calcium imaging pipeline tool
☆48Updated 3 months ago
Alternatives and similar repositories for optinist
Users that are interested in optinist are comparing it to the libraries listed below
Sorting:
- Implemenation of Manifold Inference from Neural Dynamics (MIND) from Low & Lewallen et. al, '18☆30Updated 6 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆15Updated this week
- IaC codebase for the NeuroCAAS Platform☆38Updated last year
- Region Of Interest Classification and Tracking☆27Updated last week
- Jax implementation of normcorre☆12Updated 10 months ago
- ☆28Updated last month
- Distributed behavioral experiments☆95Updated 9 months ago
- NEural MOdelS, a statistical modeling framework for neuroscience.☆111Updated this week
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Adaptive Platform for Neuroscience Experiments☆42Updated last week
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆73Updated 4 months ago
- Machine Learning Methods for Neural Data Analysis☆20Updated 6 months ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆61Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated this week
- Live Mouse Tracker analysis☆33Updated this week
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆105Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Updated 4 years ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆19Updated last month
- code accompanying Pellegrino*, Stein*, & Cayco-Gajic (2023).☆12Updated last year
- Browser-based NWB visualization and DANDI exploration☆60Updated last week
- Examples of using MountainSort spike sorting software.☆28Updated 6 years ago
- Shareable, interactive scientific figures in the cloud☆37Updated 2 months ago
- Tutorials for learning NWB☆17Updated 3 years ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆33Updated 3 years ago
- Tool to help inspect NWB files for compliance with NWB Best Practices☆20Updated last week
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆52Updated 5 months ago
- Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.☆51Updated 2 weeks ago
- Deconvolution of calcium imaging data☆101Updated 10 months ago
- Recordings of 10k neurons during spontaneous behaviors☆54Updated last year