A simple example of parsing BAM files using htslib
☆12Mar 22, 2016Updated 10 years ago
Alternatives and similar repositories for bam-parser-tutorial
Users that are interested in bam-parser-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js …☆12Nov 8, 2025Updated 6 months ago
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- ☆11Aug 5, 2021Updated 4 years ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 11 years ago
- Corresponding code for the SIGGRAPH 2014 paper "Tangible and Modular Input Device for Character Articulation"☆21Jan 22, 2016Updated 10 years ago
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆16Feb 5, 2026Updated 3 months ago
- SQL-like query language for the SAM/BAM file format☆29Sep 20, 2023Updated 2 years ago
- A web-based interactive 3D molecular viewer with Augmented Reality & Holographic Display.☆12May 9, 2019Updated 7 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆15May 4, 2016Updated 10 years ago
- v1 of Org-roam. No longer actively maintained.☆13Jul 10, 2021Updated 4 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 3 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆62Mar 31, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆12Dec 1, 2021Updated 4 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Dec 10, 2022Updated 3 years ago
- A list of professions, apps, and human activities that are ripe for replacement by artificial intelligence. But not really.☆20Dec 3, 2024Updated last year
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- ☆21Jul 16, 2024Updated last year
- Estimating k-mer coverage histogram of genomics data☆78Mar 13, 2026Updated 2 months ago
- ☆11Oct 8, 2018Updated 7 years ago
- Boilerplate from web app using Gulp.JS☆35Jan 26, 2015Updated 11 years ago
- A lightweight Python graphing API for genomic features☆15Jul 8, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- python-nexus - Generic nexus (.nex, .trees) reader/writer for python☆11Feb 20, 2025Updated last year
- A mod for Duskers that allows you to spawn upgrades on your drones☆13Sep 5, 2021Updated 4 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 7 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆12Sep 25, 2017Updated 8 years ago
- Materials for GCB535 at Penn.☆21Apr 19, 2019Updated 7 years ago
- A theme for TaskPaper 3.5 inspired on @jpinnix TaskPaper2 theme☆17Oct 24, 2016Updated 9 years ago
- Visualization of COVID-19 spread metrics.☆11Apr 15, 2022Updated 4 years ago
- A collection of htmlwidgets handy for epidemiology, etc.☆13Jul 5, 2015Updated 10 years ago
- A clean, minimalist Taskpaper 3 theme focused on utility and GTD - updated from my Taskpaper 2 HelvetiCan theme☆16Nov 10, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Utilities for Samtools ( http://samtools.sourceforge.net/ )☆18Sep 26, 2011Updated 14 years ago
- This package has migrated to https://github.com/rezakj/iCellR please use iCellR instead of scSeqR for more functionalities and updates.☆16Oct 29, 2025Updated 6 months ago
- flappy bird game developed by cocos creator☆15May 4, 2023Updated 3 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆28Nov 6, 2021Updated 4 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆139Apr 27, 2026Updated 3 weeks ago
- UNC-Chapel Hill Bioinformatics Utilities☆24Oct 29, 2015Updated 10 years ago
- ☆14Aug 9, 2016Updated 9 years ago