Alternatives and similar repositories for PLM4Muts:

Users that are interested in PLM4Muts are comparing it to the libraries listed below

• PKUliujl / GeoSeqBuilder
  ☆26Updated 3 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 4 months ago
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆19Updated 5 months ago
• HannesStark / CodonMPNN
  ☆27Updated 4 months ago
• meilerlab / probabilities_design
  ☆13Updated last month
• programmablebio / saltnpeppr
  An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
  ☆16Updated 7 months ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆17Updated 9 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆46Updated 4 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆36Updated last week
• LPDI-EPFL / trivalent_cocktail
  ☆11Updated 4 years ago
• microsoft / seq2symm
  Homomer symmetry prediction from protein sequence
  ☆24Updated last month
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆15Updated last year
• SimonKitSangChu / EsmTherm
  ☆11Updated 11 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆18Updated 2 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆25Updated last month
• meneshail / TopoDiff
  Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"
  ☆14Updated last week
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆32Updated 6 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆27Updated last year
• THGLab / int2cart
  Building more accurate protein structures from backbone torsion angles
  ☆14Updated last month
• bwicky / oligomer_hallucination
  ☆35Updated last year
• alepandini / DyNoPy
  DyNoPy
  ☆11Updated 8 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆27Updated 6 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆31Updated 4 months ago
• daisybio / data-leakage-ppi-prediction
  Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
  ☆23Updated last year
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆27Updated 8 months ago
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 4 years ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆34Updated 7 months ago
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆21Updated last month
• TobiasHeOl / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆17Updated last month
• epicrispr-biotechnologies / evolutionary_monte_carlo_search
  Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences
  ☆11Updated last year