Python package for AAIndex database (https://www.genome.jp/aaindex/)
☆13Nov 16, 2023Updated 2 years ago
Alternatives and similar repositories for aaindex
Users that are interested in aaindex are comparing it to the libraries listed below
Sorting:
- Convert raw AAIndex data into Python-friendly, ready-to-use dataframes☆11Mar 19, 2020Updated 5 years ago
- Calculating a range of protein descriptors using their physicochemical, biological and structural properties 🔬.☆16Dec 13, 2023Updated 2 years ago
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆21Oct 31, 2025Updated 4 months ago
- EnzyMM - Enzyme Motif Miner - Geometric matching of catalytic motifs in protein structures.☆35Feb 19, 2026Updated 2 weeks ago
- protein utilities in Rust☆32Nov 9, 2025Updated 3 months ago
- Transformer for protein function prediction☆33Oct 24, 2024Updated last year
- Bogazici University - CMPE150 (Introduction to Computing C) lab notes☆11Dec 20, 2019Updated 6 years ago
- A survival guide for Vanderbilt Biostatistics first year comprehensive exams☆14May 12, 2020Updated 5 years ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆14Jan 8, 2026Updated last month
- Code for "Zero-Shot Out-of-Distribution Detection with Feature Correlations"☆13Jan 19, 2020Updated 6 years ago
- Secondary Protein Structure Prediction using Neural Networks and Deep Learning .☆10Jul 17, 2022Updated 3 years ago
- Catalyst design for the Morita−Baylis−Hillman Reaction using a graph-based genetic algorithm☆10Jul 15, 2024Updated last year
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆10Jan 23, 2026Updated last month
- USC GoFFish Graph Analytics Framework☆33Jul 10, 2014Updated 11 years ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆42Jan 27, 2026Updated last month
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 3 years ago
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆45Jul 27, 2024Updated last year
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆15Updated this week
- ☆20Aug 5, 2025Updated 7 months ago
- A cookiecutter template for (my preferred) style of python project structure☆12Oct 21, 2019Updated 6 years ago
- BigSMILES☆10Jun 16, 2024Updated last year
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 2 years ago
- Easy opaque typedef for Rust programming language.☆12Aug 22, 2019Updated 6 years ago
- Transformer for protein function prediction (version 2)☆15Jan 8, 2026Updated last month
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆11Dec 10, 2023Updated 2 years ago
- SmallK: very fast data clustering tools☆14Apr 3, 2019Updated 6 years ago
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆12Sep 3, 2024Updated last year
- This is an algorithm for evenly partitioning.☆12Aug 28, 2025Updated 6 months ago
- Enforce Rust documentation correctness☆14Dec 1, 2022Updated 3 years ago
- A new python package to visualize molecules in dots hover☆13Feb 15, 2024Updated 2 years ago
- SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinfor…☆11Aug 26, 2025Updated 6 months ago
- Software for article "Deep learning to predict the lab-of-origin of engineered DNA"☆13Aug 7, 2018Updated 7 years ago
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 2 years ago
- A package for uncertainty estimation with PyTorch☆12Aug 26, 2021Updated 4 years ago
- Einstein Summation for Arrays in R☆12Aug 31, 2023Updated 2 years ago
- PDB ProtVista Viewer☆11Jul 8, 2025Updated 7 months ago
- ☆15Jul 14, 2025Updated 7 months ago
- plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style☆17Dec 19, 2025Updated 2 months ago
- Simple Python interface to CoverM's fast coverage estimation functions☆10Dec 20, 2024Updated last year