amckenna41 / aaindexLinks
Python package for AAIndex database (https://www.genome.jp/aaindex/)
☆13Updated 2 years ago
Alternatives and similar repositories for aaindex
Users that are interested in aaindex are comparing it to the libraries listed below
Sorting:
- ☆77Updated last year
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆71Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆93Updated last month
- A Python 3 version of the protein descriptor package propy☆48Updated 2 years ago
- A generalized enzyme kinetics parameter prediction model.☆73Updated 4 months ago
- ☆56Updated 5 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆78Updated 3 months ago
- Conversion of PDBx/mmCIF files to best effort/minimal PDB files☆23Updated last year
- ☆47Updated last year
- ☆41Updated 5 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆45Updated 3 years ago
- pyFoldX: python bindings for FoldX.☆54Updated 4 years ago
- ☆76Updated 4 years ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆70Updated 5 months ago
- GTalign, high-performance protein structure alignment, superposition and search☆54Updated 5 months ago
- ☆51Updated 2 years ago
- Efficient manipulation of protein structures in Python☆61Updated 4 months ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Updated 4 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆110Updated last week
- Python package to atom map, correct and suggest enzymatic reactions☆41Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆127Updated 2 months ago
- ☆94Updated 3 months ago
- Contact map alignment☆42Updated 5 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Updated last year
- A machine learning based protein disorder predictor.☆27Updated 3 months ago
- An evolutionary context-integrated deep learning framework for protein engineering☆70Updated 3 years ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆38Updated 3 years ago
- Protein folding in Pymol☆138Updated 2 months ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆173Updated 3 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆91Updated last year