amazon-science / LC-PLMLinks
LC-PLM: long-context protein language model based on BiMamba-S architecture
☆21Updated 8 months ago
Alternatives and similar repositories for LC-PLM
Users that are interested in LC-PLM are comparing it to the libraries listed below
Sorting:
- The code for "Learning Molecular Representation in a Cell"☆36Updated 5 months ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆39Updated last year
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆44Updated 10 months ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆48Updated 3 years ago
- ☆26Updated last year
- ☆46Updated last month
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆66Updated last year
- Protein structure datasets for machine learning.☆111Updated 4 months ago
- Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions☆24Updated 2 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆57Updated last year
- A diffusion model for structure-based drug design with faster inference from learned representations of protein structure.☆29Updated last year
- ☆55Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆99Updated last year
- Toolkit for structure-based deep learning on RNA.☆40Updated 2 weeks ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆94Updated 2 years ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- Official implementation of "Learning the language of protein structures"☆38Updated 2 months ago
- Code for the paper Enhancing Activity Prediction Models in Drug Discovery with the Ability to Understand Human Language☆102Updated 11 months ago
- ALL Molecular ML papers from ICLR'25.☆38Updated 5 months ago
- ☆58Updated last year
- A Modular Architecture for Deep Learning Systems☆43Updated 3 months ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆29Updated this week
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Reference-free analysis of genetic architecture☆18Updated 11 months ago
- GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.☆40Updated 2 years ago
- ☆40Updated 2 months ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆128Updated this week
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆28Updated 3 months ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆31Updated last month