Alternatives and similar repositories for otter-knowledge

Users that are interested in otter-knowledge are comparing it to the libraries listed below

• HICAI-ZJU / KANO
  Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".
  ☆127Updated last year
• liugangcode / InfoAlign
  The code for "Learning Molecular Representation in a Cell"
  ☆37Updated 5 months ago
• QizhiPei / BioT5
  BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)
  ☆118Updated 11 months ago
• GT4SD / multitask_text_and_chemistry_t5
  Code for "Unifying Molecular and Textual Representations via Multi-task Language Modelling" @ ICML 2023
  ☆41Updated 11 months ago
• NVlabs / RetMol
  A new retrieval-based framework for controllable molecule generation.
  ☆49Updated 2 years ago
• ml-jku / clamp
  Code for the paper Enhancing Activity Prediction Models in Drug Discovery with the Ability to Understand Human Language
  ☆102Updated 11 months ago
• HHW-zhou / LLM4Mol
  A comprehensive repository dedicated to the collection and exploration of studies utilizing Large Language Models for molecular design, p…
  ☆42Updated 2 years ago
• ProtLLM / ProtLLM
  [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training
  ☆49Updated last year
• enveda / kgem-ensembles-in-drug-discovery
  Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"
  ☆20Updated last year
• SylwiaNowakowska / LLM_Fine_Tuning_Molecular_Properties
  Fine-tuning of ChemBERTA LLMs to predict molecules' HIV inhibition replication.
  ☆31Updated last year
• IBM / AutoPeptideML
  AutoML system for building trustworthy peptide bioactivity predictors
  ☆33Updated this week
• zaixizhang / FLAG
  Implementation of ICLR23 paper "Molecule Generation for Target Protein Binding with Structural Motifs"
  ☆69Updated last year
• phenixace / MolReGPT
  ☆51Updated last year
• AstraZeneca / kgem-in-drug-discovery
  Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…
  ☆34Updated last month
• hwwang55 / MolR
  Chemical-Reaction-Aware Molecule Representation Learning
  ☆80Updated 3 years ago
• NYUSHCS / MolecularGPT
  ☆37Updated last year
• blender-nlp / MolT5
  Associated Repository for "Translation between Molecules and Natural Language"
  ☆182Updated last year
• KyGao / ABGNN
  PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"
  ☆53Updated last year
• chao1224 / ChatDrug
  LLM for Drug Editing, ICLR 2024
  ☆152Updated last year
• Rose-STL-Lab / LIMO
  generative model for drug discovery
  ☆64Updated last month
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆91Updated 7 months ago
• zjunlp / OntoProtein
  [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
  ☆150Updated 5 months ago
• gersteinlab / GenAI4Drug
  [Briefings in Bioinformatics] A Survey of Generative AI for de novo Drug Design
  ☆89Updated 9 months ago
• azminewasi / Awesome-MoML-ICLR25
  ALL Molecular ML papers from ICLR'25.
  ☆38Updated 5 months ago
• 595693085 / WGNN-DTA
  a method for CPI and DTA prediction
  ☆11Updated 3 years ago
• mmcdermott / structure_inducing_pre-training
  ☆16Updated 2 years ago
• yazdanimehdi / AttentionSiteDTI
  This is The repository for Paper "AttentionSiteDTI: Attention Based Model for Predicting Drug-Target Interaction Using Graph Representati…
  ☆44Updated last year
• smiles724 / GNN-Bottleneck
  ☆40Updated 2 months ago
• rxn4chemistry / biocatalysis-model
  RXN for biochemical reactions
  ☆69Updated 2 years ago
• HySonLab / Protein_Pretrain
  Multimodal Pretraining for Unsupervised Protein Representation Learning
  ☆22Updated last year