Knowledge-enhanced learned representation enriches protein sequence and SMILES drug databases with a large Knowledge Graph fused from different sources. This improves results on TDC drug target binding affinity prediction benchmarks.
☆65Apr 24, 2026Updated 5 months ago
Alternatives and similar repositories for otter-knowledge
Users that are interested in otter-knowledge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The repo consists of a Python package that works with functional data. In particular, it includes two distinct methodologies: Functional …☆14Sep 18, 2025Updated last year
- AutoML system for building trustworthy peptide bioactivity predictors☆42Aug 24, 2026Updated last month
- Ontology representing a 360-view of a person (or cohort) that spans across multiple domains, from health to social.☆34Sep 17, 2025Updated last year
- Code for reproducing paper describing methods for representing peptides☆18Sep 11, 2026Updated 3 weeks ago
- Utility to incrementally learn regular expressions from examples☆27Sep 18, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GPCNDTA: prediction of drug-target binding affinity through cross-attention networks augmented with graph features and pharmacophores☆17Jan 19, 2025Updated last year
- Though language model text embeddings have revolutionized NLP research, their ability to capture high-level semantic information, such as…☆28Apr 28, 2023Updated 3 years ago
- Zero and Few shot named entity & relationships recognition☆403Sep 17, 2025Updated last year
- ☆40Jun 3, 2024Updated 2 years ago
- DrugGen: Advancing Drug Discovery with Large Language Models and Reinforcement Learning Feedback☆21May 22, 2025Updated last year
- A framework for designing, executing and analysing experiment campaigns☆65Updated this week
- DeepDrugDomain: A versatile Python toolkit for streamlined preprocessing and accurate prediction of drug-target interactions and binding …☆29Oct 22, 2024Updated last year
- Proof Of Concept showcasing composable GPUs in Kubernetes☆30Sep 7, 2026Updated last month
- Can Text-based Knowledge Graph Completion Benefit From Zero-Shot Large Language Models?☆18Dec 9, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Mastery of a Three-Word Language for Knowledge Graph Completion☆33Feb 24, 2025Updated last year
- ☆16Sep 10, 2024Updated 2 years ago
- A novel graph neural network strategy with the Vina distance optimization terms to predict protein-ligand binding affinity☆32May 16, 2024Updated 2 years ago
- A framework for agentic tool use training with reinforcement learning☆205Apr 8, 2026Updated 6 months ago
- Build foundation model for RNA or DNA data☆63Sep 17, 2026Updated 3 weeks ago
- Independent evaluation set construction for trustworthy ML models in biochemistry☆15Aug 24, 2026Updated last month
- ☆24Mar 2, 2025Updated last year
- ☆14Apr 10, 2024Updated 2 years ago
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆14Apr 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Create and deploy virtual-experiments - co-processing computational workflows☆10Aug 24, 2026Updated last month
- ☆60Aug 23, 2024Updated 2 years ago
- ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs☆80May 10, 2024Updated 2 years ago
- Code for the paper Enhancing Activity Prediction Models in Drug Discovery with the Ability to Understand Human Language☆120Feb 26, 2026Updated 7 months ago
- ☆13Oct 19, 2023Updated 2 years ago
- [LREC-COLING 2024] Multi-perspective Improvement of Knowledge Graph Completion with Large Language Models☆55May 13, 2025Updated last year
- Leveraging Large Language Models for Concept Graph Recovery and Question Answering in NLP Education☆42Sep 10, 2024Updated 2 years ago
- Drug-target binding affinity prediction using representation learning, graph mining, and machine learning☆25Mar 21, 2022Updated 4 years ago
- The Steerability toolkit is an extensible library for general purpose steering of language models.☆123Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Apr 6, 2025Updated last year
- Diagnosing policy grounding in LLM judges via causal erasure. Companion code to the AIES 2026 submission READ.☆21Aug 1, 2026Updated 2 months ago
- ☆20Aug 5, 2024Updated 2 years ago
- Fine-tuning of ChemBERTA LLMs to predict molecules' HIV inhibition replication.☆35Sep 15, 2023Updated 3 years ago
- Working repo to support the Alliance's Open Trusted Data Initiative☆19Sep 21, 2026Updated 2 weeks ago
- NP-KG: Knowledge Graph Framework for Natural Product-Drug Interactions☆20Jun 25, 2024Updated 2 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago