sarahhbellum / NobBS
Nowcasting by Bayesian Smoothing
☆18Updated last year
Alternatives and similar repositories for NobBS:
Users that are interested in NobBS are comparing it to the libraries listed below
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- ☆11Updated this week
- R package for real-time Rt estimation with penalized splines☆13Updated last week
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Course on nowcasting and forecasting of infectious disease dynamcis☆14Updated 3 weeks ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆15Updated this week
- ☆10Updated this week
- ☆30Updated last week
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆15Updated this week
- ☆10Updated 3 months ago
- epidemia package☆48Updated 2 years ago
- Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.☆16Updated 2 weeks ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆11Updated 2 months ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆23Updated 3 weeks ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated 4 months ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆18Updated last year
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆18Updated last week
- Data and statistical models for biomarker shedding.☆13Updated last week
- ☆38Updated last month
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆58Updated this week
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆16Updated 8 months ago
- Repository to the R package nowcaster, nowcasting with INLA☆18Updated 2 months ago
- ☆21Updated this week
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated last year
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 8 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- ☆28Updated 2 months ago
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago