adrianzap / softwipeLinks
Check and score C/C++ software quality
☆67Updated 2 years ago
Alternatives and similar repositories for softwipe
Users that are interested in softwipe are comparing it to the libraries listed below
Sorting:
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆88Updated last week
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆84Updated last year
- Truly parallel gzip decompression☆125Updated 5 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 2 years ago
- ☆13Updated last month
- modular k-mer count matrix and Bloom filter construction for large read collections☆84Updated 9 months ago
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆37Updated 2 months ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆81Updated last year
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆52Updated 2 years ago
- Parallel Block GZIP☆50Updated 8 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- DartMinHash: Fast Sketching for Weighted Sets☆13Updated 4 years ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆60Updated last year
- A fast, AVX2 and ARM Neon accelerated FM index library☆32Updated 7 months ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Updated 3 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆66Updated 2 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated 11 months ago
- FM-index representation of a de Bruijn graph☆27Updated 7 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆26Updated 3 years ago
- PHYLIP package starting with version 4.0a☆19Updated last month
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- ☆10Updated last year
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- TreeSwift: Fast tree module for Python 3☆81Updated 8 months ago
- Codon's bioinformatics module☆54Updated last month
- Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly☆120Updated this week
- ☆25Updated 4 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 5 months ago
- ♥ Essential Functions for DNA Manipulation☆20Updated last month
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago