YinLiLin / SumTool

Related projects ⓘ

Alternatives and complementary repositories for SumTool

• KangchengHou / admix-kit
  Toolkit for analyzing genetics data from admixed populations
  ☆22Updated 9 months ago
• cgrace1978 / manhplot
  Manhattan++
  ☆27Updated 9 months ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆26Updated 6 months ago
• explodecomputer / random-metal
  Adding random effects model to the METAL software
  ☆12Updated last year
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• yanglab-emory / TIGAR
  ☆20Updated 2 weeks ago
• kaustubhad / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆36Updated 5 months ago
• jrs95 / gassocplot
  Regional association plots
  ☆25Updated 7 months ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆20Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆49Updated last week
• Yves-CHEN / DENTIST
  DENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.
  ☆21Updated last year
• astheeggeggs / UKBB_ldsc_r2
  genetic correlation between phenotypes in the UK biobank
  ☆13Updated 9 months ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆30Updated 9 months ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆32Updated 4 years ago
• bhattacharya-a-bt / isotwas
  ☆19Updated last month
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆15Updated 3 weeks ago
• MRCIEU / PhenoSpD
  ☆18Updated 6 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆20Updated 6 years ago
• huwenboshi / s-ldxr
  Stratified squared trans-ethnic genetic correlation
  ☆12Updated 2 years ago
• cuelee / pleio
  ☆17Updated 8 months ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆13Updated last year
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆22Updated 4 years ago
• oliviasabik / RACER
  An R package for generating comparative regional association plots
  ☆18Updated this week
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated 7 months ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• MCorentin / vargen
  VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…
  ☆15Updated 9 months ago
• CNSGenomics / impute-pipe
  Canonical SGE cluster genotype imputation pipeline
  ☆12Updated 8 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆27Updated 3 weeks ago