GrowCab / SpeedSeed3Links
SS^3
☆15Updated 4 years ago
Alternatives and similar repositories for SpeedSeed3
Users that are interested in SpeedSeed3 are comparing it to the libraries listed below
Sorting:
- Machine learning workshop materials☆15Updated last year
- A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.☆111Updated last year
- Protobuf and gRPC specifications for the MinKNOW API☆66Updated 3 months ago
- "Reads to report" for public health and clinical microbiology☆143Updated last month
- ☆133Updated last year
- Catalog of genomic indexes freely available from public clouds☆67Updated 2 weeks ago
- SKESA assembler☆124Updated last year
- scripts used to download and analyze insect assemblies from GenBank☆15Updated 4 years ago
- Antibiotic resistance prediction in minutes☆113Updated last year
- software for UCE (and general) phylogenomics☆87Updated 2 months ago
- ONT assembly and Illumina polishing pipeline☆87Updated 5 years ago
- PASTA (Practical Alignment using SATe and Transitivity)☆95Updated 8 months ago
- Bioinformatics tool for Locus Visualisation☆159Updated 2 weeks ago
- Scripts for file processing and analysis in phylogenetics and phylogeography☆13Updated 5 years ago
- Python3 scripts to manipulate FASTA and FASTQ files☆72Updated 10 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated 2 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆72Updated 3 years ago
- Repository containing lists of all published ancient metagenomic (and related) samples and libraries☆79Updated this week
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆130Updated last year
- Automatic Assembly For The Fungi☆26Updated this week
- Error correction for Illumina RNA-seq reads☆67Updated last month
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆102Updated 2 years ago
- The ARTIC fieldbioinformatics pipeline☆128Updated last month
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆177Updated 2 months ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆82Updated 3 months ago
- a tool for inferring species tree from sequencing reads☆156Updated last month
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆99Updated last week
- Open-source usearch☆128Updated 5 months ago
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆24Updated last month
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆51Updated 6 months ago