WheelerLab / GWAS_QC
☆8Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for GWAS_QC
- genetic correlation between phenotypes in the UK biobank☆13Updated 9 months ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Updated 4 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆11Updated 5 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆16Updated 2 weeks ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆17Updated 3 weeks ago
- ☆13Updated 8 years ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14Updated 10 years ago
- Sample code for ldsc analyses in UKBB☆28Updated last year
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- Interactive table from gemini output☆10Updated 5 years ago
- Allele frequency filter app☆14Updated 2 years ago
- Data management of large-scale whole-genome sequence variant calls (Development version only)☆44Updated last week
- materials and website for the 2016 kallisto sleuth workshop☆11Updated 8 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Interactive eQTL visualizations☆13Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 5 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 4 years ago
- Mixed Model Package For Genome-wide association mapping.☆17Updated 5 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆12Updated 9 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated last month
- Pipelines for NGS, imputation, gwas, ...☆28Updated 4 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated last year
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 3 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Updated 12 years ago
- ☆15Updated 7 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆17Updated last month
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago