Alternatives and similar repositories for HCPPipelines

Users that are interested in HCPPipelines are comparing it to the libraries listed below

• arielletambini / denoiser
  Nuisance removal tool for fMRI data
  ☆57Updated last year
• faskowit / multiAtlasTT
  multi atlas transfer tools for neuroimaging (maTT)
  ☆67Updated last year
• miykael / atlasreader
  Python interface for generating coordinate tables and region labels from statistical MRI images
  ☆113Updated 2 weeks ago
• PennLINC / xcpEngine
  Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.
  ☆65Updated 2 years ago
• kwagstyl / surface_tools
  Tools for mesh surface-based operations
  ☆38Updated 9 months ago
• ReproNim / reproin
  A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners
  ☆49Updated 6 months ago
• ColeLab / ColeAnticevicNetPartition
  Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)
  ☆82Updated 4 years ago
• yetianmed / subcortex
  ☆139Updated 5 months ago
• PennLINC / xcp_d
  Post-processing of fMRIPrep, NiBabies, and HCP outputs
  ☆102Updated this week
• edickie / ciftify
  The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
  ☆128Updated 3 years ago
• compneuro-ncu / fmridenoise
  Tool for automatic denoising, denoising strategies comparison, and functional connectivity data quality control.
  ☆48Updated 2 years ago
• andersonwinkler / PALM
  PALM: Permutation Analysis of Linear Models
  ☆80Updated this week
• SIMEXP / load_confounds
  Load fMRIprep confounds in python
  ☆38Updated 3 years ago
• NeuroanatomyAndConnectivity / gradient_analysis
  ☆103Updated 8 years ago
• gllmflndn / gifti
  MATLAB/Octave GIfTI Library
  ☆27Updated 9 months ago
• HALFpipe / HALFpipe
  ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
  ☆106Updated this week
• bids-apps / MRtrix3_connectome
  Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software pac…
  ☆54Updated last week
• maartenmennes / ICA-AROMA
  ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
  ☆104Updated last year
• juryxy / JuSpace
  This is the repository for the JuSpace toolbox allowing for cross-modal correlations between imaging data and positron emission tomograph…
  ☆62Updated 8 months ago
• miykael / parcellation_fragmenter
  Fragments FreeSurfer parcellation annotation in N-equal sized parcels
  ☆28Updated 5 years ago
• Washington-University / cifti-matlab
  MATLAB code for reading and writing CIFTI connectivity files
  ☆67Updated last year
• NeuroanatomyAndConnectivity / surfdist
  For calculating exact geodesic distances on cortical surface meshes
  ☆53Updated last year
• DCAN-Labs / abcd-hcp-pipeline
  bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
  ☆57Updated 2 months ago
• MidnightScanClub / MSCcodebase
  The Midnight Scanning Club Codebase
  ☆37Updated 6 years ago
• jdiedrichsen / suit
  Toolbox for the analysis of cerebellar imaging data
  ☆23Updated last year
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆43Updated 2 months ago
• templateflow / templateflow
  The TemplateFlow Archive - A DataLad super-dataset
  ☆93Updated 3 weeks ago
• raamana / visualqc
  VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
  ☆74Updated 5 months ago
• StuartJO / plotSurfaceROIBoundary
  Plot the boundaries of ROIs on a surface
  ☆70Updated 8 months ago
• canlab / Neuroimaging_Pattern_Masks
  Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.
  ☆128Updated 2 weeks ago