Alternatives and similar repositories for subcortex

Users that are interested in subcortex are comparing it to the libraries listed below

• koenhaak / congrads
  Congrads is a data-driven method for mapping the spatial organisation of connectivity within a pre-defined region-of-interest (i.e. conne…
  ☆39Updated 7 years ago
• PennLINC / xcp_d
  Post-processing of fMRIPrep, NiBabies, and HCP outputs
  ☆98Updated this week
• sidchop / RepoNeuroVis
  Reproducible and Programmatic Human Neuroimaging Visualisations
  ☆81Updated 2 years ago
• canlab / Neuroimaging_Pattern_Masks
  Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.
  ☆125Updated 3 weeks ago
• juryxy / JuSpace
  This is the repository for the JuSpace toolbox allowing for cross-modal correlations between imaging data and positron emission tomograph…
  ☆56Updated 4 months ago
• NeuroanatomyAndConnectivity / gradient_analysis
  ☆99Updated 8 years ago
• Washington-University / cifti-matlab
  MATLAB code for reading and writing CIFTI connectivity files
  ☆67Updated 10 months ago
• arielletambini / denoiser
  Nuisance removal tool for fMRI data
  ☆57Updated last year
• netneurolab / hansen_receptors
  Data and code supporting Hansen et al., 2022 Nature Neuroscience "Mapping neurotransmitter systems to the structural and functional organ…
  ☆99Updated 2 years ago
• StuartJO / plotSurfaceROIBoundary
  Plot the boundaries of ROIs on a surface
  ☆68Updated 4 months ago
• ColeLab / ColeAnticevicNetPartition
  Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)
  ☆77Updated 4 years ago
• jordandekraker / hippunfold_toolbox
  ☆18Updated last year
• faskowit / multiAtlasTT
  multi atlas transfer tools for neuroimaging (maTT)
  ☆65Updated 9 months ago
• miykael / atlasreader
  Python interface for generating coordinate tables and region labels from statistical MRI images
  ☆105Updated 2 weeks ago
• miykael / parcellation_fragmenter
  Fragments FreeSurfer parcellation annotation in N-equal sized parcels
  ☆28Updated 5 years ago
• DiedrichsenLab / fs_LR_32
  Standard human cortical surface-based template for neuroimaging analyses (Freesurfer, left-right-symmetric, ~32k vertices) v
  ☆46Updated last year
• HALFpipe / HALFpipe
  ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
  ☆101Updated this week
• bids-apps / HCPPipelines
  A BIDS App for minimal preprocessing using the HCP Pipelines
  ☆36Updated 2 weeks ago
• jdiedrichsen / suit
  Toolbox for the analysis of cerebellar imaging data
  ☆21Updated last year
• MICA-MNI / BrainStat
  A statistics and context decoding toolbox for neuroimaging.
  ☆107Updated 11 months ago
• MICA-MNI / micaopen
  Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute
  ☆80Updated 3 months ago
• murraylab / brainsmash
  Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity
  ☆49Updated last year
• neurodata / neuroparc
  ☆193Updated 2 years ago
• dutchconnectomelab / Simple-Brain-Plot
  brainPlot is a MATLAB function to create simple line-art brain plots.
  ☆96Updated 3 years ago
• gllmflndn / gifti
  MATLAB/Octave GIfTI Library
  ☆27Updated 5 months ago
• MidnightScanClub / MSCcodebase
  The Midnight Scanning Club Codebase
  ☆36Updated 6 years ago
• rubykong / cbig_network_correspondence
  ☆45Updated 2 months ago
• spin-test / spin-test
  This toolbox includes MATLAB scripts to perform a "spin test" of anatomical correspondence between cortical surface maps, as presented in…
  ☆53Updated 5 years ago
• DiedrichsenLab / cerebellar_atlases
  ☆37Updated 2 months ago
• frantisekvasa / rotate_parcellation
  Code (in Matlab and R) to perform a spherical rotation (permutation) of a parcellated cortical map.
  ☆45Updated 2 years ago