Alternatives and similar repositories for subcortex

Users that are interested in subcortex are comparing it to the libraries listed below

• sidchop / RepoNeuroVis
  Reproducible and Programmatic Human Neuroimaging Visualisations
  ☆83Updated 2 years ago
• faskowit / multiAtlasTT
  multi atlas transfer tools for neuroimaging (maTT)
  ☆68Updated last year
• Washington-University / cifti-matlab
  MATLAB code for reading and writing CIFTI connectivity files
  ☆69Updated last year
• juryxy / JuSpace
  This is the repository for the JuSpace toolbox allowing for cross-modal correlations between imaging data and positron emission tomograph…
  ☆64Updated 9 months ago
• arielletambini / denoiser
  Nuisance removal tool for fMRI data
  ☆57Updated last year
• jordandekraker / hippunfold_toolbox
  ☆19Updated last year
• NeuroanatomyAndConnectivity / gradient_analysis
  ☆106Updated 8 years ago
• PennLINC / xcp_d
  Post-processing of fMRIPrep, NiBabies, and HCP outputs
  ☆107Updated this week
• ColeLab / ColeAnticevicNetPartition
  Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)
  ☆83Updated 4 years ago
• canlab / Neuroimaging_Pattern_Masks
  Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.
  ☆128Updated 2 months ago
• StuartJO / plotSurfaceROIBoundary
  Plot the boundaries of ROIs on a surface
  ☆72Updated 9 months ago
• netneurolab / hansen_receptors
  Data and code supporting Hansen et al., 2022 Nature Neuroscience "Mapping neurotransmitter systems to the structural and functional organ…
  ☆118Updated 3 years ago
• MICA-MNI / BrainStat
  A statistics and context decoding toolbox for neuroimaging.
  ☆116Updated last week
• DiedrichsenLab / fs_LR_32
  Standard human cortical surface-based template for neuroimaging analyses (Freesurfer, left-right-symmetric, ~32k vertices) v
  ☆54Updated 2 years ago
• HALFpipe / HALFpipe
  ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
  ☆113Updated this week
• rubykong / cbig_network_correspondence
  ☆53Updated this week
• miykael / atlasreader
  Python interface for generating coordinate tables and region labels from statistical MRI images
  ☆116Updated this week
• neurodata / neuroparc
  ☆209Updated 2 years ago
• bids-apps / HCPPipelines
  A BIDS App for minimal preprocessing using the HCP Pipelines
  ☆37Updated last month
• jdiedrichsen / suit
  Toolbox for the analysis of cerebellar imaging data
  ☆23Updated last year
• murraylab / brainsmash
  Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity
  ☆56Updated last year
• danjgale / surfplot
  A package for publication-ready brain surface figures
  ☆70Updated 2 months ago
• frantisekvasa / rotate_parcellation
  Code (in Matlab and R) to perform a spherical rotation (permutation) of a parcellated cortical map.
  ☆49Updated 2 years ago
• dutchconnectomelab / Simple-Brain-Plot
  brainPlot is a MATLAB function to create simple line-art brain plots.
  ☆105Updated 4 years ago
• NSBLab / BrainEigenmodes
  Code supporting 'Geometric constraints on human brain function'
  ☆109Updated 10 months ago
• compneuro-ncu / fmridenoise
  Tool for automatic denoising, denoising strategies comparison, and functional connectivity data quality control.
  ☆48Updated 2 years ago
• MidnightScanClub / MSCcodebase
  The Midnight Scanning Club Codebase
  ☆38Updated 6 years ago
• MICA-MNI / micaopen
  Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute
  ☆82Updated 8 months ago
• kwagstyl / surface_tools
  Tools for mesh surface-based operations
  ☆40Updated 11 months ago
• ZaixuCui / pncSingleFuncParcel
  Codes for the project "development of functional topography"
  ☆18Updated 5 years ago