Alternatives and similar repositories for subcortex:

Users that are interested in subcortex are comparing it to the libraries listed below

• arielletambini / denoiser
  Nuisance removal tool for fMRI data
  ☆56Updated 11 months ago
• faskowit / multiAtlasTT
  multi atlas transfer tools for neuroimaging (maTT)
  ☆63Updated 3 months ago
• Washington-University / cifti-matlab
  MATLAB code for reading and writing CIFTI connectivity files
  ☆65Updated 4 months ago
• sidchop / RepoNeuroVis
  Reproducible and Programmatic Human Neuroimaging Visualisations
  ☆79Updated last year
• PennLINC / xcp_d
  Post-processing of fMRIPrep, NiBabies, and HCP outputs
  ☆83Updated this week
• koenhaak / congrads
  Congrads is a data-driven method for mapping the spatial organisation of connectivity within a pre-defined region-of-interest (i.e. conne…
  ☆36Updated 6 years ago
• MidnightScanClub / MSCcodebase
  The Midnight Scanning Club Codebase
  ☆33Updated 5 years ago
• StuartJO / plotSurfaceROIBoundary
  Plot the boundaries of ROIs on a surface
  ☆64Updated 8 months ago
• DiedrichsenLab / fs_LR_32
  Standard human cortical surface-based template for neuroimaging analyses (Freesurfer, left-right-symmetric, ~32k vertices) v
  ☆40Updated last year
• gllmflndn / gifti
  MATLAB/Octave GIfTI Library
  ☆25Updated last year
• jordandekraker / hippunfold_toolbox
  ☆18Updated 9 months ago
• sina-mansour / UKB-connectomics
  This repository will host scripts used to map structural and functional brain connectivity matrices for the UK biobank dataset.
  ☆63Updated last year
• NeuroanatomyAndConnectivity / gradient_analysis
  ☆90Updated 7 years ago
• juryxy / JuSpace
  This is the repository for the JuSpace toolbox allowing for cross-modal correlations between imaging data and positron emission tomograph…
  ☆41Updated 6 months ago
• MICA-MNI / BrainStat
  A statistics and context decoding toolbox for neuroimaging.
  ☆100Updated 4 months ago
• TingsterX / alignment_macaque-human
  cross-species alignment (joint-embedding between human and macaque)
  ☆26Updated 3 years ago
• bids-apps / HCPPipelines
  A BIDS App for minimal preprocessing using the HCP Pipelines
  ☆33Updated 3 months ago
• dutchconnectomelab / Simple-Brain-Plot
  brainPlot is a MATLAB function to create simple line-art brain plots.
  ☆84Updated 3 years ago
• HALFpipe / HALFpipe
  ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
  ☆80Updated this week
• MICA-MNI / micaopen
  Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute
  ☆74Updated last week
• danjgale / surfplot
  A package for publication-ready brain surface figures
  ☆56Updated 6 months ago
• ZaixuCui / pncSingleFuncParcel
  Codes for the project "development of functional topography"
  ☆18Updated 4 years ago
• canlab / Neuroimaging_Pattern_Masks
  Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.
  ☆113Updated this week
• ColeLab / ColeAnticevicNetPartition
  Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)
  ☆68Updated 4 years ago
• NSBLab / BrainEigenmodes
  Code supporting 'Geometric constraints on human brain function'
  ☆93Updated last year
• alexteghipco / brainSurfer
  MATLAB toolbox for visualizing brain data on surfaces.
  ☆32Updated 2 months ago
• MASILab / SynBOLD-DisCo
  Synthetic BOLD images for distortion correction of fMRI without additional calibration scans
  ☆23Updated last year
• predictive-clinical-neuroscience / PCNtoolkit-demo
  Demo and tutorial for PCNtoolkit routines
  ☆31Updated 7 months ago
• edickie / ciftify
  The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
  ☆119Updated 2 years ago
• trendscenter / gift
  Group ICA/IVA software (MATLAB)
  ☆79Updated 2 weeks ago