Alternatives and similar repositories for WGSExtract-Dev

Users that are interested in WGSExtract-Dev are comparing it to the libraries listed below

• apriha / snps
  tools for reading, writing, merging, and remapping SNPs
  ☆111Updated this week
• mentatpsi / OSGenome
  An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
  ☆136Updated last year
• apriha / lineage
  tools for genetic genealogy and the analysis of consumer DNA test results
  ☆171Updated 5 months ago
• tkrahn / extract23
  Extract a simulated 23andMe (V3) style file from a Whole Genome BAM file
  ☆33Updated 8 months ago
• 23andMe / seqseek
  Easy access to human reference genome sequences
  ☆57Updated 2 years ago
• WGSExtract / WGSExtract.github.io
  WGS Extract WWW home
  ☆44Updated 2 months ago
• 23andMe / yhaplo
  Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men
  ☆119Updated 3 weeks ago
• plashchynski / awesome-genetics
  A curated list of awesome personal genomics software, libraries, and educational resources.
  ☆145Updated last year
• plantimals / 2vcf
  convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations
  ☆59Updated 6 years ago
• vcftools / vcftools
  A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
  ☆539Updated 7 months ago
• samtools / bcftools
  This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…
  ☆826Updated this week
• genometools / genometools
  GenomeTools genome analysis system.
  ☆330Updated last month
• bcgsc / abyss
  Assemble large genomes using short reads
  ☆328Updated 8 months ago
• Ensembl / ensembl-vep
  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
  ☆513Updated this week
• stevenliuyi / admix
  an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.
  ☆70Updated 3 years ago
• ComparativeGenomicsToolkit / cactus
  Official home of genome aligner based upon notion of Cactus graphs
  ☆633Updated this week
• CDCgov / SARS-CoV-2_Sequencing
  A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
  ☆349Updated 2 years ago
• nf-core / eager
  A fully reproducible and state-of-the-art ancient DNA analysis pipeline
  ☆190Updated 3 weeks ago
• ababaian / serratus
  Ultra-deep search for novel viruses
  ☆273Updated 2 years ago
• lucapinello / CRISPResso
  Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
  ☆137Updated 6 years ago
• ncbi / ncbi-vdb
  ncbi-vdb
  ☆92Updated this week
• samtools / hts-specs
  Specifications of SAM/BAM and related high-throughput sequencing file formats
  ☆691Updated last month
• brentp / peddy
  genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
  ☆144Updated 5 months ago
• nextstrain / nextclade
  Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
  ☆250Updated last week
• sanger-pathogens / Artemis
  Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the…
  ☆258Updated last year
• iobio / gene.iobio
  Gene.iobio vue
  ☆65Updated 3 weeks ago
• chapmanb / cloudbiolinux
  CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
  ☆257Updated last year
• ncbi / datasets
  NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
  ☆490Updated this week
• broadinstitute / viral-ngs
  [THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble …
  ☆195Updated last year
• lh3 / bioawk
  BWK awk modified for biological data
  ☆633Updated 3 years ago