VCF compression tool
☆10Jun 24, 2024Updated 2 years ago
Alternatives and similar repositories for GSC
Users that are interested in GSC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10May 15, 2025Updated last year
- Workflow Execution Service Backend☆21Oct 12, 2026Updated last week
- ☆15Feb 6, 2021Updated 5 years ago
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆14Oct 22, 2025Updated last year
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Secure and federated genome-wide association studies☆19Mar 19, 2025Updated last year
- Calculate position-dependent diffusivity functions from trajectory data (usually from molecular dynamics). The approach is described in h…☆11Mar 25, 2025Updated last year
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 5 years ago
- Complex structural variant visualization for HiFi sequencing data☆51Aug 6, 2026Updated 2 months ago
- University of Sydney colour palettes for ggplot2☆16Oct 6, 2026Updated 2 weeks ago
- VCF file compressor reaching over 30-fold efficiency on massive genotype datasets, with processing speeds up to 100 MB/s and peak memory …☆19Oct 5, 2026Updated 2 weeks ago
- Distance-based Phylogenetic Placer☆25Sep 8, 2026Updated last month
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated last year
- Mixed-effect model to test differences in cell type proportions from single-cell data, in Python☆10Aug 6, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- XReason - formal reasoning about explanations for ML models☆18Sep 8, 2026Updated last month
- ☆11Sep 11, 2024Updated 2 years ago
- Nextflow pipelines to process long read ONT and/or pacbio HiFi data☆19Updated this week
- Vector Approximate Message Passing inference framework for GWAS☆21Jun 12, 2026Updated 4 months ago
- ☆19Sep 24, 2024Updated 2 years ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆16Nov 14, 2022Updated 3 years ago
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆16Nov 28, 2019Updated 6 years ago
- Code for aladynoulli☆21Jun 17, 2026Updated 4 months ago
- shifts hg19/38 genomic position for feasible input format.☆12Jun 8, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- This is the software for FAst Marginal Epistasis test (FAME)☆14Jul 21, 2026Updated 3 months ago
- R package for visualising high-dimensional categorical data. Fully ggplot compatible implementation for the diceplot plotting library☆13Jul 8, 2026Updated 3 months ago
- KaryoScope: rapid, alignment-free sequence annotation for the pangenome era☆29Updated this week
- Core Hunter 3: a flexible core subset selection tool☆10Sep 11, 2025Updated last year
- Predict 5mC in PacBio HiFi reads☆12Nov 2, 2022Updated 3 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 6 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 6 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Codex 专用 AI 代理工具，支持官方和第三方账户混搭切换☆45Updated this week
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆27Sep 2, 2021Updated 5 years ago
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆16May 14, 2026Updated 5 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆38Sep 13, 2023Updated 3 years ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆22Aug 13, 2025Updated last year
- ☆14Oct 17, 2024Updated 2 years ago
- Variant catalogue pipeline☆26Jan 30, 2026Updated 8 months ago