RuleWorld / rulebenderLinks
Rule-Based Modeling and Simulation Gui
☆12Updated 5 years ago
Alternatives and similar repositories for rulebender
Users that are interested in rulebender are comparing it to the libraries listed below
Sorting:
- Markdown version of Cytoscape manual☆12Updated last month
- Rule-based modeling framework☆65Updated 5 months ago
- StochSS - Software as a Service for modeling, simulation, inference and analysis of biochemical models. https://live.stochss.org☆25Updated 2 years ago
- JavaScript-based pathway viewer and editor☆35Updated 8 months ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 2 months ago
- Python package for building SBML models without needing to use libSBML.☆10Updated 4 years ago
- COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model☆10Updated 9 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated last year
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- cy3sbml: SBML for Cytoscape 3☆14Updated 2 weeks ago
- Linear MALDI-ToF simultaneous spectrum deconvolution and baseline removal☆11Updated 5 years ago
- Derive ΔG for single residues from HDX-MS data☆28Updated 2 weeks ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Updated 8 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- A repository to practice contributing to a Manubot manuscript☆47Updated 5 months ago
- ☆49Updated this week
- time picture explorer.☆12Updated 10 years ago
- Cytoscape app that clusters a given network based on topology to find densely connected regions☆10Updated 2 years ago
- Materials Resource Registry☆14Updated 8 years ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆54Updated last week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated 2 months ago
- A knowledge resource on cell lines - From SIB CALIPHO group☆14Updated last year
- ☆26Updated last month
- Jupyter lab widget for rendering graphs (networks)☆24Updated 3 years ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Updated 3 months ago
- MCell Monte Carlo Simulator of Cellular Microphysiology☆37Updated 6 months ago
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Updated last week
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago