[Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations
☆23Apr 18, 2026Updated last month
Alternatives and similar repositories for 3DMolMS
Users that are interested in 3DMolMS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods☆38Apr 15, 2026Updated last month
- ☆11Nov 30, 2024Updated last year
- Efficiently predicting high resolution mass spectra with graph neural networks☆32Aug 3, 2023Updated 2 years ago
- Tandem Mass Spectrum Prediction with Graph Transformers☆100Aug 26, 2024Updated last year
- MASS-SPEC ATTENDS TO DE NOVO MOLECULAR GENERATION☆20Sep 23, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Predicting MS1 precursor chemical formula from MS/MS data☆24Sep 20, 2023Updated 2 years ago
- Predicting tandem mass spectra from molecules☆141Updated this week
- Defined MRM transitions from untargeted metabolomics data☆11Nov 13, 2023Updated 2 years ago
- ☆13May 10, 2021Updated 5 years ago
- ☆12Feb 5, 2024Updated 2 years ago
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆31Dec 19, 2024Updated last year
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆52Apr 28, 2026Updated 3 weeks ago
- R package for optimized LC-MS spectra processing☆29May 18, 2026Updated last week
- a python package for molecular formula analysis in MS-based small molecule studies☆33Jan 28, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Publicly-accessible repo for ACS paper "Rapid Approximate Subset-Based Spectra Prediction for Electron Ionization−Mass Spectrometry" (RAS…☆26Jan 25, 2023Updated 3 years ago
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆22Aug 30, 2025Updated 8 months ago
- Shiny app for retention time prediction☆11Dec 1, 2025Updated 5 months ago
- R Package for Systematic Optimization of Metabolomic Data Processing☆17Apr 4, 2025Updated last year
- Converting LC−MS-based Untargeted Metabolomics Data into Image towards Clinical Diagnosis☆12Apr 13, 2023Updated 3 years ago
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Sep 6, 2022Updated 3 years ago
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆18Mar 26, 2026Updated 2 months ago
- DeepMASS2 is a cross-platform GUI software tool, which enables deep-learning based metabolite annotation via semantic similarity analysis…☆14Jan 22, 2026Updated 4 months ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆20Oct 15, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆11Apr 10, 2022Updated 4 years ago
- ☆12Jan 16, 2025Updated last year
- ☆14Apr 16, 2026Updated last month
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆127May 8, 2026Updated 2 weeks ago
- Mass Spectrometry for Small Molecules using Deep Learning☆136Jun 30, 2021Updated 4 years ago
- A "fairly fast" ISOtope PAttern Calculator for Python☆13Sep 27, 2023Updated 2 years ago
- R Interface to the ClassyFire REST API☆14Updated this week
- Rocker image for metabolomics data analysis☆13Oct 25, 2025Updated 7 months ago
- Official Implementation of Expressivity and Generalization: Fragment-Biases for Molecular GNNs☆20Nov 6, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- IsoCor: Isotope Correction for mass spectrometry labeling experiments☆24Apr 25, 2025Updated last year
- Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)☆176Apr 27, 2026Updated 3 weeks ago
- The dataset, code, and software for the paper 'Retention Time Prediction for Chromatographic Enantioseparation by Quantile Geometry-enhan…☆19Jul 18, 2023Updated 2 years ago
- A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data☆25Jan 21, 2024Updated 2 years ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆24Nov 11, 2024Updated last year
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆51Aug 28, 2023Updated 2 years ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆31Apr 11, 2023Updated 3 years ago