Prediction of tandem mass spectra from 3D molecular conformations
☆24Aug 12, 2026Updated 2 months ago
Alternatives and similar repositories for 3DMolMS
Users that are interested in 3DMolMS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficiently predicting high resolution mass spectra with graph neural networks☆32Aug 3, 2023Updated 3 years ago
- ☆11Nov 30, 2024Updated last year
- Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods☆42Apr 15, 2026Updated 6 months ago
- Tandem Mass Spectrum Prediction with Graph Transformers☆101Aug 26, 2024Updated 2 years ago
- Defined MRM transitions from untargeted metabolomics data☆12Nov 13, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Predicting tandem mass spectra from molecules☆170Updated this week
- Predicting MS1 precursor chemical formula from MS/MS data☆29Sep 20, 2023Updated 3 years ago
- ☆13May 10, 2021Updated 5 years ago
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆32Dec 19, 2024Updated last year
- MASS-SPEC ATTENDS TO DE NOVO MOLECULAR GENERATION☆23Sep 23, 2025Updated last year
- ☆13Feb 5, 2024Updated 2 years ago
- The High Performance Collision Cross Section (HPCCS) is a new software for fast and accurate calculation of CCS for molecular ions. Based…☆17May 11, 2020Updated 6 years ago
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆56Apr 28, 2026Updated 6 months ago
- R Package for Systematic Optimization of Metabolomic Data Processing☆17Apr 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Formula IDentification from tandem mass spectra by Deep LEarning☆17Oct 24, 2026Updated last week
- Shiny app for retention time prediction☆11Dec 1, 2025Updated 11 months ago
- Converting LC−MS-based Untargeted Metabolomics Data into Image towards Clinical Diagnosis☆12Apr 13, 2023Updated 3 years ago
- R package for optimized LC-MS spectra processing☆31Oct 28, 2026Updated last week
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆21Oct 15, 2024Updated 2 years ago
- a python package for molecular formula analysis in MS-based small molecule studies☆42Aug 27, 2026Updated 2 months ago
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆84Jun 5, 2024Updated 2 years ago
- 2-step approach for transferable retention time prediction☆16Updated this week
- The similarity score for spectral comparison☆92Mar 5, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- DeepMASS2 is a cross-platform GUI software tool, which enables deep-learning based metabolite annotation via semantic similarity analysis…☆16Jan 22, 2026Updated 9 months ago
- Publicly-accessible repo for ACS paper "Rapid Approximate Subset-Based Spectra Prediction for Electron Ionization−Mass Spectrometry" (RAS…☆28Jan 25, 2023Updated 3 years ago
- A bioinformatic tool facilitating automated in-source fragmentation identification☆11Sep 6, 2022Updated 4 years ago
- Mass Spectrometry for Small Molecules using Deep Learning☆138Jun 30, 2021Updated 5 years ago
- ☆18Apr 7, 2026Updated 6 months ago
- Code for tidymass2 manuscript☆11Dec 15, 2025Updated 10 months ago
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆89Sep 15, 2026Updated last month
- ☆13Jan 16, 2025Updated last year
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆26Aug 14, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆159May 8, 2026Updated 5 months ago
- Source code of AllCCS. Prediction function was provided in AllCCS web server (http://allccs.zhulab.cn/).☆10Mar 1, 2022Updated 4 years ago
- A "fairly fast" ISOtope PAttern Calculator for Python☆13Sep 27, 2023Updated 3 years ago
- Spectral entropy for mass spectrometry data.☆39Oct 5, 2026Updated last month
- ☆24Sep 18, 2025Updated last year
- OpenAPI based libraries for different programming languages like R and Python☆26Sep 23, 2026Updated last month
- ☆11Apr 10, 2022Updated 4 years ago