int-brain-lab / ibl-neuropixelLinks
Collection of tools to handle Neuropixel 1.0 and 2.0 data
☆17Updated last month
Alternatives and similar repositories for ibl-neuropixel
Users that are interested in ibl-neuropixel are comparing it to the libraries listed below
Sorting:
- ☆22Updated last week
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆62Updated this week
- WIP: Python port of Kilosort2☆50Updated 2 years ago
- Browser-based NWB visualization and DANDI exploration☆59Updated last week
- UnitRefine is a machine-learning toolbox that simplifies spike sorting curation by reducing manual curation.☆26Updated last month
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆40Updated 5 months ago
- Collection of probe description for probeinterface☆16Updated last month
- Open Neurophysiology Environment☆20Updated 2 months ago
- Metrics for spike sorting validation/quality control☆14Updated 3 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- IBL core shared libraries☆63Updated this week
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Mesoscale activity ephys ingest schema☆11Updated 2 years ago
- Functions to assess quality of spike sorting results☆34Updated last year
- Neuroelectrophysiology object model and data analysis in Python.☆50Updated 2 weeks ago
- Web app for viewing results of ephys spike sorting☆26Updated 2 weeks ago
- IaC codebase for the NeuroCAAS Platform☆38Updated last year
- pyqt5 dependent applications for IBL sessions☆28Updated 2 weeks ago
- Revealing neural correlates of behavior without behavioral measurements☆15Updated 5 years ago
- Files and instructions for manufacturing NP1.0, NP2.0alpha, and NP2.0 Neuropixels chronic recording fixtures.☆23Updated last month
- ☆52Updated 11 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆128Updated last month
- Tools for analyzing spiking data from single-neuron recodings.☆29Updated 2 months ago
- CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.☆12Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Histology processing☆69Updated last month
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 3 weeks ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆19Updated 3 weeks ago