Python package for the semi-supervised analysis of multi-omics data
☆15Oct 15, 2025Updated 9 months ago
Alternatives and similar repositories for SOFA
Users that are interested in SOFA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆15Aug 17, 2023Updated 2 years ago
- factor models for omics data☆44Updated this week
- ☆10Dec 15, 2024Updated last year
- ☆22Apr 30, 2025Updated last year
- Workbench demo project: cross-analysis of AoU and UKB.☆15May 2, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code and simulations using interaction-LD score regression☆13Jul 2, 2024Updated 2 years ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Sep 6, 2025Updated 10 months ago
- Python package for analysing and visualising brain connectome data☆11May 16, 2024Updated 2 years ago
- An analytical approach for GWAS-by-Subtraction☆15May 27, 2025Updated last year
- ☆18May 22, 2026Updated last month
- BaCaDI: Bayesian Causal Discovery with Unknown Interventions☆15Feb 23, 2023Updated 3 years ago
- A multi-ancestry polygenic risk score approach☆22Jul 20, 2024Updated 2 years ago
- Material for the RNAseq course☆10Aug 8, 2019Updated 6 years ago
- CONCERT predicts niche-aware perturbation responses in spatial transcriptomics☆24Nov 13, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Gene Expression Imputation with Generative Adversarial Imputation Nets☆13Mar 25, 2023Updated 3 years ago
- ☆11Jan 13, 2020Updated 6 years ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated 2 years ago
- scTM: A package for topic modelling in transcriptomics data☆26May 1, 2024Updated 2 years ago
- Sample web application using Hyperledger Iroha to send/receive/view point transactions.☆13Jul 14, 2026Updated last week
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Oct 31, 2022Updated 3 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- ☆19May 25, 2026Updated last month
- An interpretable deep learning model for cancer classification using high-dimensional omics data☆18Jan 24, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python library for the Pimoroni mics6814 breakout☆10Dec 22, 2025Updated 6 months ago
- A comprehensive R package for label-free proteomics data analysis and modeling☆16May 7, 2026Updated 2 months ago
- Interactive spatial transcriptomics viewer for h5ad files☆16Mar 14, 2026Updated 4 months ago
- A sickeningly awesome geom.☆17Nov 14, 2019Updated 6 years ago
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- A neural network model to predict splice site usage and splicing-altering mutations☆17Jul 24, 2025Updated 11 months ago
- R package for easy interop between Perseus and R☆17Sep 9, 2022Updated 3 years ago
- ☆20Jun 19, 2026Updated last month
- An R package to calculate carbon footprints from air travel based on IATA airport codes or latitude and longitude.☆18Jul 31, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 5 months ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 4 months ago
- GraphQL API that provides information about the different public transport / urban mobility services of Barcelona☆15Jun 28, 2021Updated 5 years ago
- ☆36Jun 15, 2026Updated last month
- On the Effects of Quantisation on Model Uncertainty in Bayesian Neural Networks☆18Apr 8, 2024Updated 2 years ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆22Jun 10, 2026Updated last month
- Critical Assessment of Intrinsic Disorder☆18Updated this week