Predicting tandem mass spectra from molecules
☆135Feb 10, 2026Updated last month
Alternatives and similar repositories for ms-pred
Users that are interested in ms-pred are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficiently predicting high resolution mass spectra with graph neural networks☆32Aug 3, 2023Updated 2 years ago
- Tandem Mass Spectrum Prediction with Graph Transformers☆100Aug 26, 2024Updated last year
- Predicting MS1 precursor chemical formula from MS/MS data☆24Sep 20, 2023Updated 2 years ago
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆23Oct 13, 2025Updated 5 months ago
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆76Jun 5, 2024Updated last year
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆116Nov 13, 2025Updated 4 months ago
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆48Feb 23, 2026Updated last month
- Publicly-accessible repo for ACS paper "Rapid Approximate Subset-Based Spectra Prediction for Electron Ionization−Mass Spectrometry" (RAS…☆26Jan 25, 2023Updated 3 years ago
- Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)☆166Mar 4, 2026Updated 3 weeks ago
- a python package for molecular formula analysis in MS-based small molecule studies☆33Jan 28, 2026Updated last month
- Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods☆36Jan 18, 2026Updated 2 months ago
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆31Dec 19, 2024Updated last year
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆253Updated this week
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Sep 6, 2022Updated 3 years ago
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆142Nov 7, 2025Updated 4 months ago
- ☆22Sep 18, 2025Updated 6 months ago
- ☆107Mar 10, 2026Updated 2 weeks ago
- The similarity score for spectral comparison☆85Mar 5, 2025Updated last year
- ☆11Nov 30, 2024Updated last year
- Official Implementation of Expressivity and Generalization: Fragment-Biases for Molecular GNNs☆20Nov 6, 2024Updated last year
- Ultra-fast and Accurate Spectrum Matching☆34Nov 27, 2023Updated 2 years ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆56Nov 6, 2025Updated 4 months ago
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆78Feb 25, 2026Updated last month
- Mass Spectrometry for Small Molecules using Deep Learning☆134Jun 30, 2021Updated 4 years ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆51Aug 28, 2023Updated 2 years ago
- [NeurIPS 24] Can LLMs Solve Molecule Puzzles? A Multimodal Benchmark for Molecular Structure Elucidation☆18Jan 2, 2026Updated 2 months ago
- MASS-SPEC ATTENDS TO DE NOVO MOLECULAR GENERATION☆20Sep 23, 2025Updated 6 months ago
- MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.☆18Nov 14, 2023Updated 2 years ago
- ☆12Jan 16, 2025Updated last year
- ☆29Jun 23, 2023Updated 2 years ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆20Oct 15, 2024Updated last year
- Spectral entropy for mass spectrometry data.☆36Mar 17, 2026Updated last week
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- Flash entropy search☆16Sep 24, 2023Updated 2 years ago
- ☆12Jul 10, 2022Updated 3 years ago
- A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data☆26Jan 21, 2024Updated 2 years ago
- ☆13May 10, 2021Updated 4 years ago
- Jupyter Notebook Tutorials for Creating Chemical Space Networks☆39Dec 27, 2023Updated 2 years ago
- Molecular fingerprint prediction from MS/MS (FingerID).☆19Feb 28, 2018Updated 8 years ago